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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:322.1 nTPM
HPA:322.1 nTPM
GTEx:264.6 nTPM
FANTOM5:246.1 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:100.6 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 322.1
Sample id Sample description nTPM
Amygdala
nTPM: 322.1
2695 Female, age 67, right hemisphere 330.4
2814 Male, age 76, right hemisphere 329.0
2514 Male, age 75, right hemisphere 322.1
2517 Female, age 94, left hemisphere 314.8
1987 Female, age 91, left hemisphere 314.1
Basal amygdala
nTPM: 312.1
2827 Female, age 67, right hemisphere 323.0
2609 Male, age 75, right hemisphere 318.4
2110 Male, age 80, left hemisphere 313.0
1955 Male, age 76, both hemispheres 307.4
2685 Female, age 94, left hemisphere 305.4
2243 Female, age 91, right hemisphere 305.2
Central amygdala
nTPM: 314.0
2515 Male, age 75, right hemisphere 321.1
2826 Female, age 94, left hemisphere 318.9
1905 Male, age 76, both hemispheres 315.5
2239 Male, age 80, left hemisphere 310.2
2701 Female, age 91, right hemisphere 304.4
Corticomedial amygdala
nTPM: 308.4
2428 Male, age 75, right hemisphere 312.2
2535 Female, age 67, right hemisphere 311.1
2829 Male, age 80, left hemisphere 310.8
2240 Male, age 76, both hemispheres 307.8
2429 Female, age 94, left hemisphere 307.1
2242 Female, age 91, right hemisphere 301.5
Lateral amygdala
nTPM: 318.8
2830 Female, age 67, right hemisphere 339.1
2516 Male, age 75, right hemisphere 321.5
1883 Male, age 76, both hemispheres 320.5
2256 Male, age 80, left hemisphere 316.0
2534 Female, age 94, left hemisphere 312.1
2255 Female, age 91, right hemisphere 303.4
Stria terminalis, bed nucleus
nTPM: 307.0
1974 Female, age 91, both hemispheres 314.7
2486 Female, age 94, both hemispheres 305.3
2201 Male, age 74, unknown 300.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 264.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 264.6
Samples: 152

Max nTPM: 1167.5
Min nTPM: 133.7
Std nTPM: 109.8
Median nTPM: 242.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1167.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 577.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 528.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 509.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 508.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 506.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 503.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 496.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 454.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 399.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 381.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 373.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 369.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 354.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 347.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 347.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 345.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 340.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 337.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 336.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 331.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 330.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 329.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 323.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 323.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 322.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 320.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 317.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 315.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 315.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 315.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 312.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 312.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 305.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 304.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 301.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 296.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 296.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 290.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 290.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 290.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 289.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 289.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 287.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 287.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 284.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 281.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 281.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 278.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 273.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 273.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 271.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 271.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 269.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 269.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 269.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 268.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 267.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 263.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 261.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 260.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 259.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 259.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 256.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 256.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 255.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 251.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 250.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 249.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 249.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 248.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 247.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 247.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 245.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 244.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 243.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 238.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 238.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 238.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 237.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 237.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 235.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 235.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 234.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 234.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 234.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 233.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 233.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 230.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 228.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 227.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 223.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 222.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 220.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 219.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 216.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 215.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 215.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 214.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 212.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 212.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 211.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 210.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 210.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 210.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 209.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 209.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 207.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 207.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 206.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 206.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 206.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 205.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 204.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 204.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 203.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 203.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 201.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 199.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 196.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 195.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 193.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 192.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 189.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 186.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 186.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 179.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 178.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 178.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 177.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 177.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 176.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 172.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 166.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 166.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 162.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 156.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 155.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 147.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 246.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 246.1
FF:10151-102I7 76 years, female 246.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.1
Pig sample Sample description nTPM
Amygdala
nTPM: 18.1
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.7
Sample A Female 23.0
Sample B Female 16.6
Sample C Male 17.0
Sample D Male 15.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.6
Samples: 4

Max nTPM: 108.5
Min nTPM: 94.0
Sample A Male 94.0
Sample B Male 108.5
Sample C Female 102.6
Sample D Female 97.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
69288650 Antisense, RP_050407_01_D10, Mouse strain C57BL/6J (56 days, male) 10.0

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