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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:336.5 nTPM
HPA:336.5 nTPM
GTEx:374.8 nTPM
FANTOM5:535.5 Scaled Tags Per Million
Pig:41.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 336.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 333.3
2565 Male, age 75, midline 341.9
1981 Female, age 72, midline 336.5
2816 Male, age 47, midline 333.5
2194 Female, age 79, both hemispheres 329.6
2048 Male, age 55, midline 325.4
Cervical spinal cord, dorsal horn
nTPM: 334.8
2296 Male, age 66, both hemispheres 369.8
2173 Female, age 72, unknown 345.1
2069 Male, age 47, both hemispheres 332.9
1877 Male, age 55, unknown 325.9
2297 Male, age 75, both hemispheres 321.5
2721 Male, age 90, both hemispheres 313.8
Cervical spinal cord, ventral horn
nTPM: 336.5
2098 Female, age 72, unknown 357.6
2809 Male, age 90, both hemispheres 348.4
2480 Male, age 75, both hemispheres 335.0
2295 Male, age 66, both hemispheres 329.7
2068 Male, age 55, unknown 324.9
2820 Female, age 79, both hemispheres 323.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 374.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 374.8
Samples: 159

Max nTPM: 736.8
Min nTPM: 203.8
Std nTPM: 97.4
Median nTPM: 365.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 736.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 673.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 663.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 637.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 629.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 606.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 579.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 557.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 535.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 529.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 526.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 520.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 519.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 519.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 513.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 509.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 494.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 492.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 489.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 485.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 485.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 480.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 478.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 475.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 472.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 467.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 467.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 452.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 452.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 449.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 449.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 445.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 444.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 444.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 438.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 429.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 427.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 426.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 423.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 423.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 423.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 421.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 420.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 419.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 418.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 413.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 413.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 411.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 409.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 409.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 408.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 406.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 404.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 403.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 398.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 395.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 395.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 395.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 391.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 390.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 390.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 384.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 384.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 381.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 381.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 380.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 378.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 378.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 377.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 375.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 375.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 373.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 370.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 369.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 369.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 368.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 367.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 367.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 366.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 365.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 360.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 359.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 357.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 354.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 352.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 352.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 350.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 349.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 348.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 348.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 347.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 347.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 345.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 342.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 341.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 341.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 340.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 336.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 334.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 334.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 333.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 332.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 330.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 330.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 329.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 327.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 326.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 322.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 322.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 321.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 320.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 319.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 310.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 309.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 309.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 306.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 303.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 302.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 299.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 295.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 295.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 293.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 293.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 292.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 291.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 290.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 290.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 288.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 287.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 287.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 284.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 283.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 282.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 277.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 274.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 274.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 272.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 271.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 271.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 269.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 268.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 268.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 268.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 264.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 261.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 260.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 260.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 259.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 258.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 257.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 257.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 251.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 247.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 246.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 234.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 220.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 218.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 204.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 203.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 535.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 535.5
FF:10181-103D1 60 years, female 607.6
FF:10159-103A6 76 years, female 463.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 41.3
Samples: 4

Max nTPM: 57.4
Min nTPM: 31.6
Sample A Female 31.6
Sample B Female 38.0
Sample C Male 57.4
Sample D Male 38.2
Ventral spinal cord
nTPM: 36.4
Samples: 4

Max nTPM: 42.8
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 33.2
Sample C Male 42.8
Sample D Male 40.3

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