MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:336.7 nTPM
HPA:336.7 nTPM
GTEx:302.3 nTPM
FANTOM5:491.0 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:101.0 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 336.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 325.0
2019 Male, age 18, unknown 344.9
2666 Male, age 74, left hemisphere 341.4
2586 Male, age 75, left hemisphere 334.8
2411 Female, age 72, unknown 323.7
1827 Male, age 72, unknown 323.4
1830 Male, age 51, unknown 319.0
1833 Male, age 53, unknown 318.2
2828 Female, age 72, unknown 316.9
1870 Female, age 42, unknown 316.1
2219 Male, age 76, both hemispheres 311.4
Dorsal raphe nucleus
nTPM: 316.8
2750 Male, age 76, both hemispheres 331.8
1828 Male, age 53, unknown 324.5
2047 Male, age 72, unknown 311.2
2298 Female, age 72, unknown 308.6
2016 Female, age 72, unknown 307.8
Inferior colliculus
nTPM: 313.4
1890 Male, age 53, unknown 326.3
2097 Female, age 72, unknown 316.7
1848 Female, age 42, unknown 306.3
2849 Male, age 72, unknown 304.1
Median raphe nucleus
nTPM: 328.3
2220 Male, age 76, midline 328.3
Pedunculopontine tegmental nucleus
nTPM: 319.2
2334 Male, age 80, both hemispheres 331.7
1921 Female, age 85, both hemispheres 314.6
2338 Male, age 61, both hemispheres 311.3
Periaquaductal grey, anterior
nTPM: 312.1
2502 Female, age 75, unknown 318.1
1795 Male, age 51, unknown 310.5
1947 Male, age 18, unknown 307.6
Periaquaductal grey, dorsal
nTPM: 313.4
2850 Male, age 76, both hemispheres 331.0
1831 Male, age 72, unknown 320.9
2464 Female, age 72, unknown 309.2
1840 Male, age 53, unknown 292.7
Periaquaductal grey, lateral
nTPM: 310.6
2140 Male, age 76, both hemispheres 319.7
2053 Male, age 18, unknown 307.5
2272 Male, age 74, both hemispheres 304.5
Pretectal area
nTPM: 324.3
2007 Male, age 72, unknown 346.8
1817 Female, age 42, unknown 341.5
1815 Male, age 53, unknown 339.6
1816 Male, age 51, unknown 335.2
1944 Female, age 72, unknown 333.6
2407 Male, age 75, both hemispheres 326.0
2667 Female, age 75, unknown 314.6
2316 Male, age 76, right hemisphere 312.1
2825 Male, age 18, unknown 308.3
2273 Male, age 74, both hemispheres 305.1
2224 Female, age 72, unknown 304.4
Red nucleus
nTPM: 336.7
1904 Male, age 53, unknown 349.9
2785 Male, age 18, unknown 348.0
1865 Male, age 51, unknown 344.4
1821 Female, age 72, unknown 343.8
2503 Female, age 72, unknown 334.8
1954 Female, age 42, unknown 334.3
2588 Male, age 74, left hemisphere 334.3
2227 Male, age 72, unknown 334.1
2769 Male, age 72, unknown 332.3
2823 Male, age 76, right hemisphere 329.8
2725 Female, age 75, unknown 329.4
2584 Male, age 75, left hemisphere 324.9
Substantia nigra
nTPM: 333.5
1916 Female, age 42, unknown 357.9
2409 Female, age 72, unknown 340.2
1851 Male, age 51, unknown 339.2
2699 Male, age 18, unknown 336.0
2583 Male, age 75, right hemisphere 331.4
1889 Female, age 72, unknown 330.5
1941 Male, age 53, unknown 330.1
2665 Male, age 74, both hemispheres 327.1
2590 Female, age 75, unknown 323.4
2241 Male, age 72, unknown 319.4
Superior colliculus
nTPM: 321.7
2668 Female, age 75, unknown 339.5
1913 Female, age 42, unknown 328.2
2087 Female, age 72, unknown 326.8
1995 Male, age 72, unknown 325.9
2587 Male, age 74, left hemisphere 319.5
1796 Male, age 53, unknown 318.3
2261 Male, age 18, unknown 316.7
2664 Male, age 75, both hemispheres 315.9
1839 Male, age 51, unknown 313.4
1895 Male, age 76, right hemisphere 312.6
Ventral tegmental area
nTPM: 323.8
2410 Female, age 72, unknown 336.9
2223 Female, age 72, unknown 331.0
1915 Female, age 42, unknown 325.9
2218 Male, age 76, both hemispheres 319.3
1942 Male, age 51, unknown 315.9
2021 Male, age 53, unknown 314.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 302.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 302.3
Samples: 139

Max nTPM: 616.3
Min nTPM: 160.5
Std nTPM: 89.6
Median nTPM: 272.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 616.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 594.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 567.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 540.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 536.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 516.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 512.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 489.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 487.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 481.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 475.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 491.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 491.0
FF:10158-103A5 76 years, female 491.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 26.5
Sample A Female 46.9
Sample B Female 26.5
Sample C Male 30.6
Sample D Male 29.4
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 26.5
Min nTPM: 23.1
Sample B Female 23.3
Sample C Male 26.5
Sample D Male 23.1
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.2
Sample A Female 33.8
Sample B Female 27.2
Sample C Male 30.8
Sample D Male 31.6
Superior colliculi
nTPM: 33.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 25.9
Sample A Female 39.5
Sample B Female 25.9
Sample C Male 33.9
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.0
Samples: 4

Max nTPM: 106.8
Min nTPM: 95.1
Sample A Male 106.8
Sample B Male 101.7
Sample C Female 95.1
Sample D Female 100.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69288650 Antisense, RP_050407_01_D10, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.