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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:346.6 nTPM
HPA:346.6 nTPM
FANTOM5:362.0 Scaled Tags Per Million
Pig:31.0 nTPM
Allen mouse:7.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 346.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 332.7
2301 Female, age 85, both hemispheres 339.4
2188 Female, age 91, both hemispheres 338.0
2090 Male, age 80, both hemispheres 329.3
1984 Male, age 76, both hemispheres 324.0
Dorsal cochlear nucleus
nTPM: 331.7
2802 Male, age 74, right hemisphere 341.8
2187 Female, age 91, both hemispheres 337.3
2378 Male, age 80, both hemispheres 330.5
2058 Male, age 76, both hemispheres 328.7
2370 Male, age 61, both hemispheres 320.3
Dorsal tegmental nucleus
nTPM: 332.2
2358 Male, age 61, both hemispheres 349.7
2083 Male, age 80, both hemispheres 335.4
2326 Male, age 74, both hemispheres 323.8
1936 Male, age 76, left hemisphere 319.7
Dorsolateral tegmental area
nTPM: 325.0
2751 Female, age 85, both hemispheres 351.0
2654 Male, age 80, both hemispheres 331.5
2337 Male, age 61, both hemispheres 318.0
2141 Male, age 76, both hemispheres 316.9
2360 Male, age 74, both hemispheres 307.4
Kolliker-Fuse nucleus
nTPM: 339.1
2793 Female, age 91, left hemisphere 346.7
2315 Male, age 76, right hemisphere 341.9
2163 Male, age 80, both hemispheres 328.6
Lateral lemniscal nuclei
nTPM: 326.7
2453 Male, age 74, right hemisphere 334.1
2746 Female, age 85, left hemisphere 333.7
2036 Male, age 80, both hemispheres 328.4
2320 Female, age 91, left hemisphere 326.2
2169 Male, age 76, both hemispheres 310.9
Lateral parabrachial nucleus
nTPM: 336.9
2792 Male, age 76, both hemispheres 355.8
2790 Male, age 61, both hemispheres 336.7
2013 Male, age 80, both hemispheres 330.8
2139 Female, age 85, right hemisphere 324.6
Lateral vestibular nucleus
nTPM: 326.9
2311 Male, age 80, both hemispheres 327.0
2184 Male, age 76, both hemispheres 326.9
Locus coeruleus
nTPM: 323.4
1980 Male, age 76, both hemispheres 337.3
2123 Female, age 91, both hemispheres 333.3
2720 Male, age 74, both hemispheres 325.3
2162 Male, age 80, both hemispheres 318.1
2788 Male, age 74, unknown 318.1
2317 Female, age 72, unknown 316.6
2014 Male, age 55, unknown 315.0
Medial olivary nucleus
nTPM: 346.6
1962 Male, age 76, both hemispheres 352.8
1943 Male, age 61, both hemispheres 347.0
2138 Female, age 91, both hemispheres 345.8
2851 Male, age 80, both hemispheres 341.0
Medial parabrachial nucleus
nTPM: 339.8
2463 Female, age 85, right hemisphere 351.6
2170 Female, age 91, both hemispheres 348.2
2854 Male, age 80, both hemispheres 340.6
2156 Male, age 61, both hemispheres 331.0
2786 Male, age 76, both hemispheres 327.8
Medial periolivary nuclei
nTPM: 324.3
2081 Male, age 80, both hemispheres 334.8
2458 Female, age 91, both hemispheres 327.6
2791 Male, age 74, right hemisphere 325.4
2171 Female, age 85, both hemispheres 321.7
2063 Male, age 76, both hemispheres 312.1
Motor facial nucleus
nTPM: 326.5
2697 Female, age 85, both hemispheres 336.5
2365 Male, age 74, right hemisphere 331.0
2795 Female, age 91, both hemispheres 330.3
2126 Male, age 61, both hemispheres 326.4
2327 Male, age 80, both hemispheres 326.0
2062 Male, age 76, both hemispheres 308.9
Motor trigeminal nucleus
nTPM: 324.0
2560 Male, age 74, both hemispheres 335.3
2079 Male, age 80, both hemispheres 328.6
2321 Female, age 91, both hemispheres 324.5
2309 Male, age 76, both hemispheres 319.8
2335 Male, age 61, both hemispheres 311.7
Nuclei of the trapezoid body
nTPM: 324.9
2159 Male, age 61, both hemispheres 339.2
2166 Male, age 80, both hemispheres 329.7
2368 Female, age 91, both hemispheres 323.9
2735 Female, age 85, both hemispheres 316.6
1983 Male, age 76, both hemispheres 314.8
Paramedian reticular nucleus
nTPM: 325.7
2050 Female, age 85, both hemispheres 333.6
2052 Male, age 76, both hemispheres 327.0
2057 Male, age 80, both hemispheres 324.0
2313 Male, age 61, both hemispheres 318.3
Pontine nuclei
nTPM: 337.4
2727 Male, age 61, right hemisphere 377.3
2787 Female, age 85, both hemispheres 341.9
1863 Male, age 55, unknown 336.8
2454 Male, age 74, left hemisphere 335.0
2319 Female, age 91, both hemispheres 334.3
2109 Female, age 72, unknown 331.6
2115 Male, age 80, left hemisphere 331.0
1968 Male, age 76, left hemisphere 311.8
Pontine raphe nucleus
nTPM: 324.2
2122 Female, age 85, midline 327.0
2853 Male, age 76, midline 321.4
Posteroventral cochlear nucleus
nTPM: 337.4
2341 Male, age 80, both hemispheres 361.0
2135 Female, age 91, both hemispheres 353.1
2070 Male, age 76, both hemispheres 334.4
2371 Male, age 61, both hemispheres 321.3
2752 Female, age 85, both hemispheres 317.3
Principal sensory trigeminal nucleus
nTPM: 331.9
2158 Male, age 61, both hemispheres 353.7
2367 Female, age 91, left hemisphere 331.1
2324 Male, age 76, both hemispheres 321.6
2008 Male, age 80, left hemisphere 321.0
Reticular pontine nucleus, caudal
nTPM: 328.5
2332 Male, age 80, right hemisphere 334.4
2559 Male, age 74, both hemispheres 331.6
2457 Female, age 91, both hemispheres 326.5
2092 Male, age 76, both hemispheres 321.7
Reticular pontine nucleus, oral
nTPM: 331.3
1939 Male, age 80, both hemispheres 337.0
2366 Female, age 91, both hemispheres 330.8
2361 Male, age 74, both hemispheres 330.6
2012 Female, age 85, both hemispheres 330.2
2167 Male, age 76, both hemispheres 327.9
Reticulotegmental nucleus
nTPM: 332.2
2322 Female, age 91, both hemispheres 343.2
2333 Male, age 80, both hemispheres 337.6
2452 Male, age 74, both hemispheres 332.2
2325 Male, age 76, both hemispheres 315.7
Spinal trigeminal nucleus, oral
nTPM: 323.9
2164 Male, age 80, both hemispheres 334.6
2737 Female, age 85, both hemispheres 321.5
1978 Male, age 76, both hemispheres 315.7
Subcoeruleus area
nTPM: 326.7
2369 Female, age 85, left hemisphere 351.3
1958 Male, age 80, both hemispheres 326.1
2451 Male, age 74, both hemispheres 324.3
2323 Female, age 91, left hemisphere 323.0
2089 Male, age 76, left hemisphere 308.7
Superior olive
nTPM: 326.9
2329 Male, age 80, right hemisphere 331.9
1875 Female, age 85, both hemispheres 327.5
2364 Male, age 74, right hemisphere 327.3
2561 Female, age 91, both hemispheres 325.7
2020 Male, age 76, both hemispheres 322.2
Superior vestibular nucleus
nTPM: 325.6
2061 Male, age 76, both hemispheres 336.8
2383 Male, age 74, both hemispheres 320.3
2015 Male, age 80, both hemispheres 319.9
Ventral periolivary nuclei
nTPM: 322.1
2165 Male, age 80, both hemispheres 325.5
2023 Male, age 76, both hemispheres 323.9
2130 Female, age 85, both hemispheres 319.6
2794 Female, age 91, left hemisphere 319.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 326.9
2840 Female, age 85, both hemispheres 348.1
2449 Male, age 74, both hemispheres 330.4
2161 Male, age 80, both hemispheres 329.4
2456 Female, age 91, both hemispheres 329.0
1959 Male, age 76, both hemispheres 316.7
2359 Male, age 61, both hemispheres 307.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 362.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 362.0
FF:10165-103B3 76 years, female 363.3
FF:10182-103D2 60 years, female 360.6
Pons
Scaled Tags Per Million: 146.2
FF:10033-101E6 18-54 years, mixed 146.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 31.0
Pig sample Sample description nTPM
Pons
nTPM: 31.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 22.1
Sample A Female 35.9
Sample B Female 22.1
Sample C Male 30.3
Sample D Male 35.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 7.1
69288650 Antisense, RP_050407_01_D10, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.