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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:453.6 nTPM
HPA:453.6 nTPM
GTEx:465.7 nTPM
FANTOM5:589.2 Scaled Tags Per Million
Pig:158.2 nTPM
Mouse:774.5 nTPM
Allen mouse:26.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 453.6
Sample id Sample description nTPM
Amygdala
nTPM: 414.1
2695 Female, age 67, right hemisphere 448.0
2814 Male, age 76, right hemisphere 445.3
1987 Female, age 91, left hemisphere 407.2
2517 Female, age 94, left hemisphere 385.9
2514 Male, age 75, right hemisphere 384.3
Basal amygdala
nTPM: 418.4
2243 Female, age 91, right hemisphere 447.7
2609 Male, age 75, right hemisphere 425.6
2110 Male, age 80, left hemisphere 424.7
2685 Female, age 94, left hemisphere 421.7
1955 Male, age 76, both hemispheres 403.2
2827 Female, age 67, right hemisphere 387.3
Central amygdala
nTPM: 429.8
2826 Female, age 94, left hemisphere 458.5
1905 Male, age 76, both hemispheres 427.7
2701 Female, age 91, right hemisphere 425.4
2239 Male, age 80, left hemisphere 423.1
2515 Male, age 75, right hemisphere 414.1
Corticomedial amygdala
nTPM: 414.2
2829 Male, age 80, left hemisphere 454.6
2242 Female, age 91, right hemisphere 433.2
2429 Female, age 94, left hemisphere 407.7
2428 Male, age 75, right hemisphere 400.4
2535 Female, age 67, right hemisphere 397.7
2240 Male, age 76, both hemispheres 391.4
Lateral amygdala
nTPM: 412.5
2534 Female, age 94, left hemisphere 463.4
1883 Male, age 76, both hemispheres 425.3
2516 Male, age 75, right hemisphere 416.0
2255 Female, age 91, right hemisphere 407.3
2830 Female, age 67, right hemisphere 382.1
2256 Male, age 80, left hemisphere 381.0
Stria terminalis, bed nucleus
nTPM: 453.6
1974 Female, age 91, both hemispheres 496.9
2486 Female, age 94, both hemispheres 447.2
2201 Male, age 74, unknown 416.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 465.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 465.7
Samples: 152

Max nTPM: 1291.4
Min nTPM: 61.2
Std nTPM: 178.0
Median nTPM: 422.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1291.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1230.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 956.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 936.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 909.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 839.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 824.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 791.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 776.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 742.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 718.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 714.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 711.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 667.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 655.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 640.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 630.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 627.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 626.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 625.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 624.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 617.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 616.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 603.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 601.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 598.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 593.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 590.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 588.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 585.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 584.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 582.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 580.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 575.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 573.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 570.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 566.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 562.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 551.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 549.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 549.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 545.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 544.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 543.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 536.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 532.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 521.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 520.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 516.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 509.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 509.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 504.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 501.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 495.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 495.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 493.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 491.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 491.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 490.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 488.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 484.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 483.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 479.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 475.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 469.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 462.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 459.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 454.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 450.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 448.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 441.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 438.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 431.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 427.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 425.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 423.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 422.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 419.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 417.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 415.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 415.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 413.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 412.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 410.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 408.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 407.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 406.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 405.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 405.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 403.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 396.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 395.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 392.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 389.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 388.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 387.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 383.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 383.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 382.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 373.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 372.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 369.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 369.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 365.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 365.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 365.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 363.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 361.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 361.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 356.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 354.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 349.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 344.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 344.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 341.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 340.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 340.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 340.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 339.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 338.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 334.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 332.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 331.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 326.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 324.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 323.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 323.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 323.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 319.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 318.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 318.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 313.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 302.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 298.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 297.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 289.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 286.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 281.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 277.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 276.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 269.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 257.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 252.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 251.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 247.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 245.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 245.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 242.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 240.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 146.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 61.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 589.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 589.2
FF:10151-102I7 76 years, female 589.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.2
Pig sample Sample description nTPM
Amygdala
nTPM: 158.2
Samples: 4

Max nTPM: 208.5
Min nTPM: 137.2
Sample A Female 208.5
Sample B Female 137.2
Sample C Male 140.5
Sample D Male 146.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 774.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 774.4
Samples: 4

Max nTPM: 829.9
Min nTPM: 738.5
Sample A Male 783.4
Sample B Male 738.5
Sample C Female 829.9
Sample D Female 745.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 26.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.1
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 32.3
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 20.0

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