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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:454.7 nTPM
HPA:454.7 nTPM
FANTOM5:454.8 Scaled Tags Per Million
Pig:181.2 nTPM
Allen mouse:17.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 454.7
Sample id Sample description nTPM
Area postrema
nTPM: 340.9
2054 Male, age 76, both hemispheres 370.3
2799 Male, age 61, both hemispheres 334.3
2306 Male, age 80, both hemispheres 318.1
Cuneate nuclei
nTPM: 369.3
2131 Male, age 76, both hemispheres 388.9
2376 Male, age 61, both hemispheres 361.0
2381 Male, age 80, both hemispheres 357.9
Dorsal medullary reticular nucleus
nTPM: 398.1
2040 Female, age 85, both hemispheres 435.4
2373 Male, age 61, both hemispheres 379.9
2088 Male, age 76, both hemispheres 378.9
Dorsal motor vagal complex
nTPM: 408.7
2133 Female, age 91, both hemispheres 447.9
2844 Male, age 55, unknown 442.4
2643 Male, age 74, both hemispheres 431.0
2813 Female, age 72, unknown 430.4
2000 Male, age 74, unknown 427.1
2797 Male, age 61, both hemispheres 396.5
2185 Male, age 76, both hemispheres 351.7
2807 Female, age 85, both hemispheres 342.5
Gigantocellular reticular nuclei, medullary
nTPM: 400.6
2462 Male, age 74, both hemispheres 460.6
2022 Male, age 76, right hemisphere 430.5
1876 Female, age 85, both hemispheres 404.5
2310 Male, age 80, both hemispheres 376.6
2387 Female, age 91, both hemispheres 368.3
2314 Male, age 61, both hemispheres 363.4
Gigantocellular reticular nuclei, pars
nTPM: 401.1
2168 Male, age 76, both hemispheres 474.6
2084 Female, age 85, both hemispheres 410.7
2336 Male, age 61, both hemispheres 406.8
2706 Male, age 80, both hemispheres 361.6
2330 Male, age 80, both hemispheres 351.8
Inferior olive
nTPM: 371.5
2563 Male, age 74, both hemispheres 412.6
2628 Female, age 91, both hemispheres 396.7
2085 Female, age 85, both hemispheres 375.2
2178 Male, age 61, both hemispheres 343.4
2379 Male, age 80, both hemispheres 329.5
Lateral medullary reticular nucleus
nTPM: 382.3
2044 Male, age 76, both hemispheres 426.6
2804 Female, age 91, both hemispheres 418.5
2374 Male, age 61, both hemispheres 381.8
2190 Female, age 85, both hemispheres 368.5
2305 Male, age 74, both hemispheres 352.2
2852 Male, age 80, both hemispheres 345.9
Medial vestibular nucleus
nTPM: 414.8
2803 Female, age 91, both hemispheres 440.5
2093 Male, age 80, both hemispheres 428.5
2801 Male, age 74, both hemispheres 417.5
2134 Male, age 76, both hemispheres 405.7
2743 Female, age 85, both hemispheres 401.4
2624 Male, age 61, both hemispheres 395.1
Motor hypoglossal nucleus
nTPM: 407.1
2125 Female, age 91, both hemispheres 443.1
2461 Male, age 61, both hemispheres 423.9
2132 Female, age 85, both hemispheres 422.2
2277 Male, age 76, both hemispheres 376.7
2182 Male, age 80, both hemispheres 369.9
Nucleus ambiguus
nTPM: 405.1
2096 Female, age 85, both hemispheres 464.3
2071 Male, age 76, both hemispheres 345.9
Nucleus cuneatus
nTPM: 371.2
2564 Male, age 74, both hemispheres 413.3
2805 Female, age 91, both hemispheres 398.7
2562 Male, age 61, both hemispheres 397.1
2100 Male, age 76, both hemispheres 372.9
2380 Male, age 80, both hemispheres 323.4
2808 Female, age 85, both hemispheres 321.7
Nucleus gracilis
nTPM: 342.6
2627 Male, age 74, both hemispheres 393.9
2382 Male, age 80, both hemispheres 324.0
2299 Female, age 85, both hemispheres 310.0
Nucleus raphe magnus
nTPM: 454.7
2160 Male, age 61, both hemispheres 584.6
2172 Female, age 85, both hemispheres 525.3
2455 Male, age 74, both hemispheres 442.2
2051 Male, age 76, both hemispheres 418.4
2328 Male, age 80, both hemispheres 397.4
2459 Female, age 91, both hemispheres 360.5
Nucleus raphe obscurus
nTPM: 364.5
2800 Male, age 61, midline 396.4
2845 Female, age 85, midline 381.3
2142 Male, age 76, midline 315.8
Nucleus raphe pallidus
nTPM: 355.2
2183 Male, age 80, midline 389.5
1924 Male, age 61, midline 356.9
2145 Male, age 76, midline 319.3
Nucleus tractus solitarii
nTPM: 368.9
2656 Male, age 76, both hemispheres 418.5
2144 Female, age 91, right hemisphere 372.8
2307 Male, age 80, both hemispheres 350.7
2191 Female, age 85, both hemispheres 333.5
Parvicellular reticular nuclei
nTPM: 402.3
2558 Male, age 74, both hemispheres 433.0
2095 Male, age 76, both hemispheres 390.4
2119 Male, age 80, both hemispheres 383.5
Parvicellular reticular nuclei, medullary
nTPM: 423.6
2189 Female, age 91, both hemispheres 436.3
2181 Male, age 80, left hemisphere 428.5
2091 Female, age 85, both hemispheres 406.0
Peritrigeminal nucleus
nTPM: 401.4
2179 Male, age 61, both hemispheres 412.6
2067 Female, age 85, both hemispheres 397.1
2136 Male, age 76, both hemispheres 394.6
Prepositus hypoglossal nucleus
nTPM: 386.5
2855 Female, age 85, right hemisphere 398.3
2086 Male, age 80, both hemispheres 374.7
Spinal trigeminal nucleus, caudal
nTPM: 396.9
2390 Female, age 91, both hemispheres 442.6
2642 Male, age 74, both hemispheres 411.1
2447 Male, age 76, both hemispheres 398.0
2308 Male, age 80, both hemispheres 367.7
2312 Male, age 61, both hemispheres 365.0
Spinal trigeminal nucleus, interpolar
nTPM: 432.9
2066 Male, age 76, right hemisphere 460.9
2625 Male, age 61, both hemispheres 442.5
2386 Female, age 85, both hemispheres 423.5
2389 Female, age 91, both hemispheres 419.7
2033 Male, age 80, both hemispheres 417.8
Spinal vestibular nucleus
nTPM: 414.7
2186 Female, age 91, both hemispheres 442.3
2780 Male, age 80, both hemispheres 436.3
2806 Female, age 85, both hemispheres 415.3
2796 Male, age 61, both hemispheres 403.0
2748 Male, age 76, both hemispheres 396.7
2384 Male, age 74, both hemispheres 394.6
Ventral medullary reticular nucleus
nTPM: 390.7
2060 Male, age 76, both hemispheres 406.4
2372 Male, age 61, both hemispheres 375.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 388.8
1986 Male, age 76, both hemispheres 409.7
2741 Female, age 85, both hemispheres 409.3
2302 Female, age 91, both hemispheres 397.6
2180 Male, age 61, both hemispheres 389.4
2118 Male, age 80, both hemispheres 338.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 454.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 454.8
FF:10038-101F2 18-64 years, mixed 548.5
FF:10174-103C3 60 years, female 423.2
FF:10155-103A2 76 years, female 392.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 181.2
Samples: 4

Max nTPM: 207.2
Min nTPM: 133.5
Sample A Female 207.2
Sample B Female 203.1
Sample C Male 181.0
Sample D Male 133.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.3
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 19.9
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 14.7

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by the Knut & Alice Wallenberg Foundation.