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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:161.7 nTPM
GTEx:161.7 nTPM
FANTOM5:298.5 Scaled Tags Per Million
Pig:90.3 nTPM
Mouse:352.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 161.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 161.7
Samples: 105

Max nTPM: 250.1
Min nTPM: 95.2
Std nTPM: 29.1
Median nTPM:
506_1 65 years, male 250.1
452_1 88 years, female 244.6
386_1 76 years, male 216.0
172_1 72 years, female 215.4
319_1 81 years, male 215.0
243_1 75 years, male 211.5
352_1 62 years, male 207.4
379_1 60 years, male 206.5
377_1 82 years, female 200.4
335_1 73 years, female 199.2
218_1 71 years, female 197.4
173_1 67 years, male 197.0
6_1 73 years, female 196.4
237_1 82 years, male 194.3
321_1 62 years, female 194.2
351_1 91 years, male 193.7
353_1 82 years, female 190.4
229_1 69 years, female 188.8
177_1 74 years, male 187.7
349_1 83 years, male 187.0
356_1 87 years, female 184.9
376_1 75 years, female 184.3
413_1 59 years, female 184.3
350_1 84 years, female 181.7
99_1 64 years, male 181.2
447_1 81 years, male 180.6
163_1 78 years, male 180.5
254_1 77 years, female 180.5
375_1 74 years, female 180.5
295_1 61 years, female 179.7
115_1 83 years, male 177.5
425_1 59 years, female 175.2
17_1 71 years, male 173.7
288_1 66 years, female 173.0
153_1 70 years, female 170.8
396_1 62 years, male 170.3
404_1 82 years, female 170.1
394_1 75 years, female 170.0
354_1 81 years, female 169.8
42_1 85 years, male 169.7
142_1 61 years, female 166.1
120_1 70 years, female 165.9
406_1 79 years, male 165.7
316_1 62 years, male 165.3
264_1 73 years, female 164.6
318_1 68 years, male 164.1
317_1 60 years, male 163.9
324_1 76 years, male 163.7
292_1 71 years, male 162.6
4_1 88 years, female 162.5
355_1 70 years, female 162.0
286_1 68 years, female 161.8
145_1 84 years, male 161.2
266_1 85 years, male 161.0
320_1 89 years, female 160.7
35_1 74 years, female 160.3
117_1 61 years, male 158.5
265_1 87 years, male 158.3
137_1 83 years, male 158.2
347_1 72 years, male 157.2
322_1 76 years, male 155.7
18_1 88 years, male 151.9
126_1 63 years, male 151.6
2_1 77 years, female 151.4
9_1 66 years, female 151.0
348_1 84 years, male 150.9
384_1 83 years, male 150.8
293_1 68 years, female 150.0
315_1 62 years, female 148.2
503_1 68 years, male 148.2
414_1 84 years, female 147.5
109_1 81 years, female 147.3
81_1 67 years, male 146.8
41_1 94 years, female 146.3
246_1 77 years, male 145.4
501_1 88 years, male 144.1
405_1 91 years, male 143.2
389_1 86 years, female 143.1
189_1 76 years, male 142.0
480_1 63 years, male 140.8
32_1 67 years, male 140.7
526_1 61 years, male 140.4
490_1 67 years, female 140.3
517_1 88 years, male 140.0
468_1 89 years, male 139.9
291_1 76 years, male 139.6
313_1 79 years, female 138.9
499_1 55 years, female 137.9
491_1 89 years, female 136.8
162_1 79 years, female 134.0
119_1 70 years, female 133.7
217_1 76 years, male 129.9
43_1 64 years, female 129.3
415_1 77 years, female 128.6
314_1 67 years, male 127.3
139_1 64 years, female 125.1
466_1 57 years, female 122.5
251_1 78 years, male 118.5
518_1 75 years, female 116.7
311_1 78 years, male 116.5
307_1 66 years, female 115.4
149_1 88 years, male 106.1
89_1 63 years, male 97.8
495_1 57 years, female 96.5
308_1 70 years, female 95.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 298.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 298.5
FF:10030-101E3 24-65 years, mixed 298.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 90.3
Pig sample Sample description nTPM
Retina
nTPM: 90.3
Samples: 4

Max nTPM: 103.0
Min nTPM: 84.2
Sample A Female 85.6
Sample B Female 103.0
Sample C Male 84.2
Sample D Male 88.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 352.2
Mouse sample Sample description nTPM
Retina
nTPM: 352.2
Samples: 4

Max nTPM: 366.7
Min nTPM: 334.9
Sample A Male 366.7
Sample B Male 355.7
Sample C Female 334.9
Sample D Female 351.3

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by the Knut & Alice Wallenberg Foundation.