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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:212.3 nTPM
HPA:212.3 nTPM
GTEx:254.4 nTPM
FANTOM5:1242.7 Scaled Tags Per Million
Pig:259.3 nTPM
Mouse:234.7 nTPM
Allen mouse:16.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 212.3
Sample id Sample description nTPM
Amygdala
nTPM: 207.1
2695 Female, age 67, right hemisphere 262.8
2814 Male, age 76, right hemisphere 218.7
2514 Male, age 75, right hemisphere 209.2
2517 Female, age 94, left hemisphere 177.3
1987 Female, age 91, left hemisphere 167.6
Basal amygdala
nTPM: 191.9
2609 Male, age 75, right hemisphere 278.2
1955 Male, age 76, both hemispheres 213.3
2243 Female, age 91, right hemisphere 212.7
2110 Male, age 80, left hemisphere 212.2
2685 Female, age 94, left hemisphere 149.9
2827 Female, age 67, right hemisphere 85.4
Central amygdala
nTPM: 212.3
2239 Male, age 80, left hemisphere 245.3
2515 Male, age 75, right hemisphere 222.3
1905 Male, age 76, both hemispheres 216.0
2701 Female, age 91, right hemisphere 206.4
2826 Female, age 94, left hemisphere 171.6
Corticomedial amygdala
nTPM: 181.7
2829 Male, age 80, left hemisphere 225.4
2428 Male, age 75, right hemisphere 215.9
2242 Female, age 91, right hemisphere 197.4
2240 Male, age 76, both hemispheres 191.2
2429 Female, age 94, left hemisphere 159.4
2535 Female, age 67, right hemisphere 100.9
Lateral amygdala
nTPM: 184.3
2256 Male, age 80, left hemisphere 259.5
2516 Male, age 75, right hemisphere 210.1
1883 Male, age 76, both hemispheres 207.9
2255 Female, age 91, right hemisphere 205.8
2534 Female, age 94, left hemisphere 153.7
2830 Female, age 67, right hemisphere 68.5
Stria terminalis, bed nucleus
nTPM: 151.2
2201 Male, age 74, unknown 223.7
2486 Female, age 94, both hemispheres 120.4
1974 Female, age 91, both hemispheres 109.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 254.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 254.4
Samples: 152

Max nTPM: 696.6
Min nTPM: 31.0
Std nTPM: 130.0
Median nTPM: 238.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 696.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 675.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 617.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 617.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 554.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 511.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 509.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 501.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 483.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 475.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 465.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 450.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 448.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 441.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 439.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 434.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 433.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 432.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 429.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 422.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 422.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 411.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 403.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 395.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 393.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 382.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 380.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 364.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 344.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 342.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 341.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 324.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 317.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 314.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 314.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 310.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 310.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 308.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 307.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 307.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 306.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 306.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 304.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 303.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 297.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 292.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 290.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 289.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 288.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 286.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 286.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 281.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 279.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 278.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 277.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 275.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 272.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 272.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 272.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 270.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 269.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 268.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 266.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 262.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 259.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 259.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 256.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 252.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 251.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 247.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 247.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 241.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 239.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 238.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 237.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 235.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 234.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 234.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 230.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 224.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 223.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 221.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 218.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 217.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 217.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 216.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 214.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 212.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 210.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 208.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 207.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 204.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 204.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 197.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 196.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 195.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 194.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 193.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 191.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 190.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 187.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 185.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 170.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 170.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 168.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 165.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 165.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 164.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 164.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 164.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 163.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 163.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 159.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 158.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 154.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 145.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 141.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 137.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 122.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 119.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 118.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 117.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 109.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 109.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 103.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 99.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 91.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 62.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 61.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 60.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 53.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 45.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1242.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1242.7
FF:10151-102I7 76 years, female 1242.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 259.3
Pig sample Sample description nTPM
Amygdala
nTPM: 259.3
Samples: 4

Max nTPM: 289.2
Min nTPM: 224.5
Sample A Female 289.2
Sample B Female 224.5
Sample C Male 263.6
Sample D Male 260.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 234.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 234.7
Samples: 4

Max nTPM: 266.2
Min nTPM: 197.3
Sample A Male 229.5
Sample B Male 197.3
Sample C Female 266.2
Sample D Female 245.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.5
74819255 Antisense, RP_060315_02_D07, Mouse strain C57BL/6J (56 days, male) 17.0
68744958 Antisense, RP_050210_01_A04, Mouse strain C57BL/6J (56 days, male) 16.0

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