MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:395.1 nTPM
HPA:395.1 nTPM
GTEx:223.8 nTPM
FANTOM5:583.6 Scaled Tags Per Million
Pig:582.6 nTPM
Mouse:480.1 nTPM
Allen mouse:17.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 395.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 229.8
2586 Male, age 75, left hemisphere 383.8
2828 Female, age 72, unknown 292.8
1833 Male, age 53, unknown 268.2
1827 Male, age 72, unknown 236.6
2219 Male, age 76, both hemispheres 218.6
2666 Male, age 74, left hemisphere 211.5
1830 Male, age 51, unknown 208.5
1870 Female, age 42, unknown 182.9
2411 Female, age 72, unknown 179.4
2019 Male, age 18, unknown 115.3
Dorsal raphe nucleus
nTPM: 290.8
2047 Male, age 72, unknown 389.4
1828 Male, age 53, unknown 375.5
2016 Female, age 72, unknown 276.0
2298 Female, age 72, unknown 220.9
2750 Male, age 76, both hemispheres 192.1
Inferior colliculus
nTPM: 395.1
2849 Male, age 72, unknown 456.1
1848 Female, age 42, unknown 436.5
1890 Male, age 53, unknown 352.8
2097 Female, age 72, unknown 335.2
Median raphe nucleus
nTPM: 220.5
2220 Male, age 76, midline 220.5
Pedunculopontine tegmental nucleus
nTPM: 244.3
2334 Male, age 80, both hemispheres 258.9
1921 Female, age 85, both hemispheres 251.1
2338 Male, age 61, both hemispheres 223.0
Periaquaductal grey, anterior
nTPM: 237.5
2502 Female, age 75, unknown 251.2
1947 Male, age 18, unknown 247.6
1795 Male, age 51, unknown 213.6
Periaquaductal grey, dorsal
nTPM: 296.4
2850 Male, age 76, both hemispheres 375.5
1840 Male, age 53, unknown 302.1
2464 Female, age 72, unknown 292.1
1831 Male, age 72, unknown 216.0
Periaquaductal grey, lateral
nTPM: 266.7
2140 Male, age 76, both hemispheres 340.7
2053 Male, age 18, unknown 288.1
2272 Male, age 74, both hemispheres 171.3
Pretectal area
nTPM: 231.3
2825 Male, age 18, unknown 321.6
1817 Female, age 42, unknown 311.8
1944 Female, age 72, unknown 272.9
2667 Female, age 75, unknown 260.2
1816 Male, age 51, unknown 255.4
2224 Female, age 72, unknown 217.0
2316 Male, age 76, right hemisphere 189.4
2273 Male, age 74, both hemispheres 188.7
1815 Male, age 53, unknown 188.3
2007 Male, age 72, unknown 175.5
2407 Male, age 75, both hemispheres 163.3
Red nucleus
nTPM: 270.5
1954 Female, age 42, unknown 349.4
2823 Male, age 76, right hemisphere 341.1
2725 Female, age 75, unknown 332.5
2503 Female, age 72, unknown 314.3
2227 Male, age 72, unknown 291.0
1821 Female, age 72, unknown 286.1
2769 Male, age 72, unknown 285.3
1865 Male, age 51, unknown 258.1
2588 Male, age 74, left hemisphere 255.0
1904 Male, age 53, unknown 240.2
2584 Male, age 75, left hemisphere 174.0
2785 Male, age 18, unknown 119.3
Substantia nigra
nTPM: 258.6
2699 Male, age 18, unknown 474.7
1916 Female, age 42, unknown 328.8
1889 Female, age 72, unknown 269.7
1941 Male, age 53, unknown 249.6
2665 Male, age 74, both hemispheres 244.1
1851 Male, age 51, unknown 218.6
2241 Male, age 72, unknown 217.3
2409 Female, age 72, unknown 205.8
2583 Male, age 75, right hemisphere 191.8
2590 Female, age 75, unknown 185.4
Superior colliculus
nTPM: 222.5
2087 Female, age 72, unknown 277.6
2664 Male, age 75, both hemispheres 268.2
1839 Male, age 51, unknown 262.8
2261 Male, age 18, unknown 261.7
1895 Male, age 76, right hemisphere 213.1
1796 Male, age 53, unknown 212.3
1995 Male, age 72, unknown 203.4
2668 Female, age 75, unknown 187.9
2587 Male, age 74, left hemisphere 173.5
1913 Female, age 42, unknown 164.8
Ventral tegmental area
nTPM: 214.0
2218 Male, age 76, both hemispheres 262.5
2410 Female, age 72, unknown 227.6
1942 Male, age 51, unknown 213.4
1915 Female, age 42, unknown 211.4
2021 Male, age 53, unknown 187.5
2223 Female, age 72, unknown 181.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 223.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 223.8
Samples: 139

Max nTPM: 968.5
Min nTPM: 25.2
Std nTPM: 158.0
Median nTPM: 196.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 968.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 808.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 758.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 730.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 727.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 599.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 573.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 490.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 485.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 472.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 468.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 583.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 583.6
FF:10158-103A5 76 years, female 583.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 582.6
Pig sample Sample description nTPM
Midbrain
nTPM: 523.1
Samples: 4

Max nTPM: 708.0
Min nTPM: 329.6
Sample A Female 329.6
Sample B Female 457.2
Sample C Male 708.0
Sample D Male 597.4
Periaqueductal gray
nTPM: 404.3
Samples: 3

Max nTPM: 446.6
Min nTPM: 329.6
Sample B Female 436.6
Sample C Male 446.6
Sample D Male 329.6
Substantia nigra
nTPM: 489.7
Samples: 4

Max nTPM: 660.9
Min nTPM: 300.0
Sample A Female 473.3
Sample B Female 300.0
Sample C Male 524.5
Sample D Male 660.9
Superior colliculi
nTPM: 582.6
Samples: 4

Max nTPM: 815.9
Min nTPM: 317.5
Sample A Female 815.9
Sample B Female 317.5
Sample C Male 560.1
Sample D Male 636.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 480.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 480.1
Samples: 4

Max nTPM: 517.1
Min nTPM: 458.4
Sample A Male 458.4
Sample B Male 461.5
Sample C Female 517.1
Sample D Female 483.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.3
74819255 Antisense, RP_060315_02_D07, Mouse strain C57BL/6J (56 days, male) 17.5
68744958 Antisense, RP_050210_01_A04, Mouse strain C57BL/6J (56 days, male) 17.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.