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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:131.6 nTPM
FANTOM5:859.1 Scaled Tags Per Million
Pig:180.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 3.9
2565 Male, age 75, midline 19.7
1981 Female, age 72, midline 0.0
2048 Male, age 55, midline 0.0
2194 Female, age 79, both hemispheres 0.0
2816 Male, age 47, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 6.2
2296 Male, age 66, both hemispheres 37.5
1877 Male, age 55, unknown 0.0
2069 Male, age 47, both hemispheres 0.0
2173 Female, age 72, unknown 0.0
2297 Male, age 75, both hemispheres 0.0
2721 Male, age 90, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 10.2
2820 Female, age 79, both hemispheres 37.3
2480 Male, age 75, both hemispheres 21.9
2295 Male, age 66, both hemispheres 1.2
2068 Male, age 55, unknown 1.1
2098 Female, age 72, unknown 0.0
2809 Male, age 90, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 131.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 131.6
Samples: 159

Max nTPM: 241.3
Min nTPM: 38.5
Std nTPM: 40.0
Median nTPM: 126.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 241.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 229.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 225.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 225.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 210.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 202.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 196.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 195.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 194.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 194.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 192.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 191.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 191.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 191.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 187.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 186.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 185.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 185.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 182.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 182.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 179.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 179.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 179.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 177.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 177.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 175.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 174.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 173.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 172.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 167.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 167.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 166.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 163.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 162.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 161.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 160.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 158.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 158.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 156.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 156.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 155.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 152.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 150.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 149.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 149.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 148.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 148.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 146.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 146.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 143.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 142.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 142.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 139.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 139.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 139.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 138.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 137.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 135.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 134.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 133.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 133.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 133.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 133.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 132.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 131.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 129.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 128.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 128.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 127.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 126.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 126.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 125.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 125.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 124.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 122.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 122.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 121.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 120.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 119.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 118.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 117.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 116.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 116.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 116.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 115.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 114.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 114.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 113.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 113.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 112.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 112.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 111.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 111.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 110.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 107.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 106.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 106.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 106.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 104.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 104.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 104.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 104.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 104.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 103.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 103.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 103.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 102.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 102.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 101.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 101.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 101.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 100.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 97.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 97.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 96.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 96.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 94.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 93.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 93.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 90.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 88.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 87.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 84.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 79.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 78.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 76.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 75.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 72.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 69.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 66.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 64.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 62.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 58.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 53.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 47.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 38.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 859.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 859.1
FF:10181-103D1 60 years, female 1057.5
FF:10159-103A6 76 years, female 660.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 180.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 151.3
Samples: 4

Max nTPM: 190.1
Min nTPM: 109.7
Sample A Female 190.1
Sample B Female 132.8
Sample C Male 109.7
Sample D Male 172.4
Ventral spinal cord
nTPM: 180.9
Samples: 4

Max nTPM: 208.9
Min nTPM: 154.7
Sample A Female 208.9
Sample B Female 173.8
Sample C Male 186.0
Sample D Male 154.7

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