BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:98.6 nTPM
HPA:98.6 nTPM
GTEx:100.8 nTPM
FANTOM5:118.7 Scaled Tags Per Million
Pig:94.4 nTPM
Mouse:100.6 nTPM
Allen mouse:11.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041997
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 98.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 88.9
2846 Female, age 79, unknown 93.5
2481 Female, age 94, left hemisphere 91.8
2288 Male, age 75, left hemisphere 91.2
2290 Female, age 72, unknown 88.8
1781 Male, age 74, unknown 88.0
1854 Male, age 80, left hemisphere 86.3
1857 Female, age 85, left hemisphere 85.9
2289 Male, age 61, right hemisphere 85.7
Claustrum
nTPM: 87.6
2196 Female, age 79, unknown 91.6
2292 Female, age 85, both hemispheres 91.3
1956 Male, age 74, unknown 89.6
2198 Male, age 80, both hemispheres 88.0
2491 Male, age 75, both hemispheres 88.0
2284 Female, age 91, both hemispheres 86.7
2645 Female, age 72, unknown 86.7
2568 Male, age 61, both hemispheres 84.2
2392 Female, age 94, both hemispheres 82.0
Globus pallidus, externus
nTPM: 95.6
1996 Male, age 80, right hemisphere 103.4
2772 Female, age 79, unknown 98.9
2646 Male, age 61, right hemisphere 94.7
2395 Male, age 75, both hemispheres 92.2
2567 Female, age 72, unknown 88.9
Globus pallidus, internus
nTPM: 98.6
2287 Male, age 75, right hemisphere 105.4
2483 Female, age 94, right hemisphere 105.0
2778 Female, age 91, both hemispheres 99.3
2111 Female, age 85, right hemisphere 96.4
2037 Male, age 80, right hemisphere 96.2
1818 Male, age 74, unknown 94.3
2566 Female, age 72, unknown 93.3
Nucleus accumbens
nTPM: 87.6
2698 Female, age 72, unknown 91.5
2286 Male, age 75, left hemisphere 89.8
1783 Male, age 74, unknown 88.9
2391 Female, age 94, left hemisphere 88.7
2732 Male, age 80, right hemisphere 87.4
1806 Female, age 85, left hemisphere 87.2
1856 Female, age 91, right hemisphere 87.0
2824 Male, age 61, right hemisphere 79.9
Nucleus basalis of Meynert
nTPM: 90.9
2569 Male, age 61, both hemispheres 97.3
2821 Male, age 75, both hemispheres 91.8
2484 Female, age 94, left hemisphere 89.5
2393 Male, age 80, right hemisphere 84.9
Nucleus of the diagonal band
nTPM: 82.8
1979 Male, age 74, unknown 85.8
1812 Female, age 91, both hemispheres 85.4
2775 Male, age 80, right hemisphere 81.9
2195 Female, age 85, both hemispheres 81.7
2029 Male, age 61, right hemisphere 79.0
Olfactory tubercle
nTPM: 82.4
1846 Male, age 80, right hemisphere 86.0
1998 Female, age 91, both hemispheres 82.0
2487 Female, age 94, left hemisphere 81.4
2856 Male, age 75, right hemisphere 80.4
Putamen
nTPM: 88.4
2482 Female, age 94, left hemisphere 94.7
2647 Male, age 75, left hemisphere 90.1
2489 Female, age 72, unknown 88.9
2466 Female, age 79, unknown 88.8
1829 Male, age 74, unknown 85.9
1937 Female, age 91, right hemisphere 85.5
1838 Male, age 80, right hemisphere 85.2
Septal nuclei
nTPM: 84.5
2199 Male, age 80, right hemisphere 86.9
1960 Male, age 74, unknown 86.6
2031 Female, age 72, unknown 85.3
2629 Female, age 94, right hemisphere 83.8
2059 Female, age 85, both hemispheres 83.7
2394 Male, age 61, left hemisphere 82.9
2009 Female, age 91, both hemispheres 82.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 100.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.2
Samples: 246

Max nTPM: 159.3
Min nTPM: 41.1
Std nTPM: 18.3
Median nTPM: 87.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 159.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 153.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 151.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 136.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 135.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 135.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 133.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 128.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 128.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 127.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 91.4
Samples: 246

Max nTPM: 222.8
Min nTPM: 47.3
Std nTPM: 22.3
Median nTPM: 86.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 222.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 178.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 158.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 157.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 148.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 139.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 138.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 136.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 132.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 132.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 131.0
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Brain - Putamen (basal ganglia)
Average nTPM: 100.8
Samples: 205

Max nTPM: 177.0
Min nTPM: 50.1
Std nTPM: 20.1
Median nTPM: 98.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 177.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 173.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 163.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 159.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 145.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 144.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 142.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 141.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 140.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 140.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 139.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.6
FF:10164-103B2 76 years, female 105.6
Globus pallidus
Scaled Tags Per Million: 118.7
FF:10161-103A8 76 years, female 127.7
FF:10175-103C4 60 years, female 109.7
Nucleus accumbens
Scaled Tags Per Million: 100.6
FF:10037-101F1 23-56 years, mixed 100.6
Putamen
Scaled Tags Per Million: 103.8
FF:10176-103C5 60 years, female 103.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 94.4
Pig sample Sample description nTPM
Caudate
nTPM: 74.5
Samples: 4

Max nTPM: 85.9
Min nTPM: 67.2
Sample A Female 69.1
Sample B Female 75.6
Sample C Male 85.9
Sample D Male 67.2
Putamen
nTPM: 94.4
Samples: 4

Max nTPM: 107.9
Min nTPM: 66.5
Sample A Female 104.4
Sample B Female 66.5
Sample C Male 107.9
Sample D Male 98.9
Septum
nTPM: 81.5
Samples: 4

Max nTPM: 93.7
Min nTPM: 76.3
Sample A Female 93.7
Sample B Female 76.3
Sample C Male 78.3
Sample D Male 77.5
Ventral pallidum
nTPM: 83.6
Samples: 4

Max nTPM: 94.0
Min nTPM: 67.2
Sample A Female 67.2
Sample B Female 94.0
Sample C Male 85.5
Sample D Male 87.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 84.9
Samples: 4

Max nTPM: 94.8
Min nTPM: 77.3
Sample A Male 86.5
Sample B Male 94.8
Sample C Female 81.0
Sample D Female 77.3
Septum
nTPM: 100.6
Samples: 4

Max nTPM: 109.2
Min nTPM: 89.5
Sample A Male 102.1
Sample B Male 101.5
Sample C Female 109.2
Sample D Female 89.5
Ventral forebrain
nTPM: 90.5
Samples: 4

Max nTPM: 98.5
Min nTPM: 84.5
Sample A Male 90.4
Sample B Male 84.5
Sample C Female 98.5
Sample D Female 88.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.6
293259 Antisense, RP_040617_01_A06, Mouse strain C57BL/6J (56 days, male) 13.1
81599612 Antisense, RP_071126_01_B12, Mouse strain C57BL/6J (56 days, male) 10.1
Pallidum
Expression energy: 10.1
293259 Antisense, RP_040617_01_A06, Mouse strain C57BL/6J (56 days, male) 12.3
81599612 Antisense, RP_071126_01_B12, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

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