MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.6 nTPM
HPA:94.6 nTPM
GTEx:118.7 nTPM
FANTOM5:121.6 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:84.7 nTPM
Allen mouse:11.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.3
1870 Female, age 42, unknown 93.3
2586 Male, age 75, left hemisphere 92.7
2019 Male, age 18, unknown 92.6
2666 Male, age 74, left hemisphere 91.7
1830 Male, age 51, unknown 91.5
2411 Female, age 72, unknown 91.1
2828 Female, age 72, unknown 90.9
1827 Male, age 72, unknown 90.4
1833 Male, age 53, unknown 90.4
2219 Male, age 76, both hemispheres 89.0
Dorsal raphe nucleus
nTPM: 91.4
2750 Male, age 76, both hemispheres 96.3
2298 Female, age 72, unknown 92.5
1828 Male, age 53, unknown 90.9
2047 Male, age 72, unknown 89.1
2016 Female, age 72, unknown 88.0
Inferior colliculus
nTPM: 87.4
2849 Male, age 72, unknown 88.3
2097 Female, age 72, unknown 87.7
1890 Male, age 53, unknown 87.1
1848 Female, age 42, unknown 86.7
Median raphe nucleus
nTPM: 94.6
2220 Male, age 76, midline 94.6
Pedunculopontine tegmental nucleus
nTPM: 92.9
2338 Male, age 61, both hemispheres 97.2
2334 Male, age 80, both hemispheres 94.0
1921 Female, age 85, both hemispheres 87.4
Periaquaductal grey, anterior
nTPM: 92.8
2502 Female, age 75, unknown 95.7
1947 Male, age 18, unknown 91.5
1795 Male, age 51, unknown 91.2
Periaquaductal grey, dorsal
nTPM: 87.3
1831 Male, age 72, unknown 88.4
2850 Male, age 76, both hemispheres 87.7
2464 Female, age 72, unknown 87.4
1840 Male, age 53, unknown 85.8
Periaquaductal grey, lateral
nTPM: 89.3
2272 Male, age 74, both hemispheres 94.8
2140 Male, age 76, both hemispheres 86.8
2053 Male, age 18, unknown 86.5
Pretectal area
nTPM: 90.1
1815 Male, age 53, unknown 92.0
2407 Male, age 75, both hemispheres 91.9
1817 Female, age 42, unknown 91.7
2007 Male, age 72, unknown 91.2
1944 Female, age 72, unknown 90.6
2273 Male, age 74, both hemispheres 89.8
1816 Male, age 51, unknown 89.7
2667 Female, age 75, unknown 89.5
2224 Female, age 72, unknown 89.2
2825 Male, age 18, unknown 88.7
2316 Male, age 76, right hemisphere 87.0
Red nucleus
nTPM: 94.3
2503 Female, age 72, unknown 98.0
1904 Male, age 53, unknown 97.1
2227 Male, age 72, unknown 95.9
1865 Male, age 51, unknown 95.8
1821 Female, age 72, unknown 95.4
2785 Male, age 18, unknown 95.2
2769 Male, age 72, unknown 94.4
2584 Male, age 75, left hemisphere 92.9
2588 Male, age 74, left hemisphere 92.8
2725 Female, age 75, unknown 92.5
1954 Female, age 42, unknown 92.2
2823 Male, age 76, right hemisphere 89.5
Substantia nigra
nTPM: 93.3
1916 Female, age 42, unknown 100.8
2699 Male, age 18, unknown 99.6
1851 Male, age 51, unknown 97.3
2665 Male, age 74, both hemispheres 96.5
1941 Male, age 53, unknown 94.9
2590 Female, age 75, unknown 92.4
1889 Female, age 72, unknown 91.1
2583 Male, age 75, right hemisphere 89.3
2241 Male, age 72, unknown 88.7
2409 Female, age 72, unknown 82.2
Superior colliculus
nTPM: 91.5
2587 Male, age 74, left hemisphere 95.8
1913 Female, age 42, unknown 95.1
1796 Male, age 53, unknown 94.0
1995 Male, age 72, unknown 94.0
2668 Female, age 75, unknown 91.4
2664 Male, age 75, both hemispheres 89.9
1839 Male, age 51, unknown 89.7
2087 Female, age 72, unknown 89.3
2261 Male, age 18, unknown 89.1
1895 Male, age 76, right hemisphere 86.7
Ventral tegmental area
nTPM: 93.9
1915 Female, age 42, unknown 97.5
2218 Male, age 76, both hemispheres 97.0
2410 Female, age 72, unknown 94.9
2223 Female, age 72, unknown 94.0
1942 Male, age 51, unknown 91.7
2021 Male, age 53, unknown 88.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.7
Samples: 139

Max nTPM: 220.0
Min nTPM: 55.9
Std nTPM: 26.5
Median nTPM: 115.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 220.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 210.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 209.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 177.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 175.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 171.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 170.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 169.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 166.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 165.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 163.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.6
FF:10158-103A5 76 years, female 121.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.0
Pig sample Sample description nTPM
Midbrain
nTPM: 114.0
Samples: 4

Max nTPM: 175.3
Min nTPM: 83.5
Sample A Female 175.3
Sample B Female 108.7
Sample C Male 83.5
Sample D Male 88.4
Periaqueductal gray
nTPM: 89.2
Samples: 3

Max nTPM: 95.8
Min nTPM: 82.9
Sample B Female 88.9
Sample C Male 95.8
Sample D Male 82.9
Substantia nigra
nTPM: 111.8
Samples: 4

Max nTPM: 141.5
Min nTPM: 97.0
Sample A Female 141.5
Sample B Female 97.0
Sample C Male 99.8
Sample D Male 108.8
Superior colliculi
nTPM: 112.6
Samples: 4

Max nTPM: 140.4
Min nTPM: 102.0
Sample A Female 140.4
Sample B Female 104.7
Sample C Male 103.1
Sample D Male 102.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 84.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.7
Samples: 4

Max nTPM: 92.1
Min nTPM: 76.5
Sample A Male 92.1
Sample B Male 83.4
Sample C Female 76.5
Sample D Female 86.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
293259 Antisense, RP_040617_01_A06, Mouse strain C57BL/6J (56 days, male) 12.7
81599612 Antisense, RP_071126_01_B12, Mouse strain C57BL/6J (56 days, male) 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.