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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:92.3 nTPM
GTEx:107.4 nTPM
FANTOM5:136.0 Scaled Tags Per Million
Pig:139.4 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 92.3
Sample id Sample description nTPM
Putamen
nTPM: 92.3
2466 Female, age 79, unknown 108.4
1829 Male, age 74, unknown 103.9
2489 Female, age 72, unknown 96.1
1937 Female, age 91, right hemisphere 94.6
2482 Female, age 94, left hemisphere 92.6
1838 Male, age 80, right hemisphere 79.9
2647 Male, age 75, left hemisphere 70.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 107.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 107.4
Samples: 205

Max nTPM: 317.0
Min nTPM: 71.1
Std nTPM: 28.9
Median nTPM: 100.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 317.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 211.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 211.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 196.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 193.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 186.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 170.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 168.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 165.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 164.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 159.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 158.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 157.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 153.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 146.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 143.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 143.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 141.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 139.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 138.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 137.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 137.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 137.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 136.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 135.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 130.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 130.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 128.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 128.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 128.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 126.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 126.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 125.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 125.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 125.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 124.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 124.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 121.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 121.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 120.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 120.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 119.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 119.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 119.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 118.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 118.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 117.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 117.7
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 117.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 116.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 116.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 116.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 116.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 115.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 115.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 115.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 114.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 114.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 114.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 114.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 113.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 113.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 113.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 112.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 112.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 112.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 110.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 110.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 110.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 108.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 108.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 108.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 108.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 107.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 107.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 107.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 106.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 106.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 105.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 105.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 105.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 105.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 105.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 105.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 105.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 105.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 104.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 104.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 104.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 104.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 104.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 104.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 103.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 102.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 102.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 102.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 101.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 101.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 101.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 101.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 101.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 100.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 100.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 100.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 100.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 100.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 99.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 99.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 99.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 99.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 99.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 99.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 99.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 98.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 98.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 98.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 97.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 97.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 97.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 97.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 97.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 97.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 97.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 96.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 96.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 96.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 96.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 95.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 95.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 95.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 95.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 95.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 94.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 94.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 94.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 94.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 94.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 93.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 93.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 93.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 92.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 92.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 92.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 92.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 91.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 91.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 91.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 91.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 91.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 90.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 90.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 90.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 90.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 89.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 89.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 89.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 89.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 89.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 89.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 88.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 88.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 88.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 87.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 87.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 87.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 87.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 86.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 86.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 86.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 85.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 85.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 85.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 84.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 84.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 84.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 84.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 83.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 83.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 83.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 83.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 82.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 82.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 82.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 82.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 81.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 81.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 81.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 81.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 81.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 80.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 79.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 79.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 79.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 79.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 79.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 78.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 77.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 76.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 76.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 74.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 72.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 72.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 71.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 71.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 71.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 136.0
FF:10176-103C5 60 years, female 136.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.4
Pig sample Sample description nTPM
Putamen
nTPM: 139.4
Samples: 4

Max nTPM: 214.6
Min nTPM: 88.7
Sample A Female 88.7
Sample B Female 121.3
Sample C Male 214.6
Sample D Male 132.9

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