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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
53.374
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:420.4 nTPM
HPA:420.4 nTPM
GTEx:976.2 nTPM
FANTOM5:1716.3 Scaled Tags Per Million
Pig:1075.8 nTPM
Mouse:2197.6 nTPM
Allen mouse:30.5 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

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Antibody HPA001830Antibody HPA071013Antibody CAB000360
Glial cells LowNot detectedNot detected
Neuronal cells MediumNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA001830
Hippocampal formation mean intensity 53.374
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 4.936
Molecular layer of the dentate gyrus 31.861
Granular dentate gyrus 1.105
CA1 - oriens layer 39.657
CA1 - pyramidal layer 11.590
CA1 - radiatum layer 39.047
CA2 - oriens layer 36.576
CA2 - pyramidal layer 24.831
CA2 - radiatum layer 43.587
CA3 - oriens layer 29.029
CA3 - pyramidal layer 3.792
CA3 - radiatum layer 23.670
Stratum lucidum 29.082
Lacunosum moleculare 53.374
Subiculum 28.234

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 420.4
Sample id Sample description nTPM
Hippocampus
nTPM: 199.2
1898 Male, age 80, left hemisphere 402.9
2621 Female, age 67, right hemisphere 308.0
2148 Female, age 91, left hemisphere 201.8
1855 Male, age 76, left hemisphere 181.1
1911 Female, age 85, right hemisphere 101.2
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 257.8
1927 Female, age 91, both hemispheres 555.9
2246 Female, age 85, both hemispheres 226.2
2531 Female, age 67, both hemispheres 204.4
2010 Male, age 76, both hemispheres 202.5
2530 Female, age 94, left hemisphere 199.1
2528 Male, age 74, both hemispheres 158.7
Entorhinal gyrus
nTPM: 199.7
2613 Female, age 94, left hemisphere 347.1
1938 Female, age 85, left hemisphere 323.9
2764 Male, age 80, right hemisphere 244.3
1787 Male, age 76, left hemisphere 159.0
2686 Male, age 75, right hemisphere 123.9
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 345.8
2749 Male, age 80, left hemisphere 760.3
1873 Female, age 85, both hemispheres 313.3
2527 Male, age 74, both hemispheres 308.4
2082 Female, age 91, right hemisphere 182.7
2045 Male, age 76, both hemispheres 164.2
Hippocampus, CA2
nTPM: 262.9
1892 Male, age 76, both hemispheres 503.6
1963 Male, age 80, left hemisphere 432.1
2249 Male, age 74, both hemispheres 189.7
1940 Female, age 85, left hemisphere 159.3
2113 Female, age 91, right hemisphere 151.1
2437 Female, age 94, left hemisphere 141.8
Hippocampus, CA3
nTPM: 276.7
2137 Male, age 80, left hemisphere 550.6
1867 Male, age 76, both hemispheres 285.7
2620 Female, age 94, left hemisphere 276.2
2436 Male, age 74, both hemispheres 246.4
2861 Female, age 67, both hemispheres 162.9
1891 Female, age 85, both hemispheres 138.3
Parahippocampal cortex
nTPM: 258.7
1990 Female, age 91, right hemisphere 403.8
1850 Male, age 80, both hemispheres 386.5
2245 Female, age 91, both hemispheres 378.2
2693 Female, age 94, both hemispheres 294.4
2250 Female, age 67, right hemisphere 272.2
1933 Female, age 85, both hemispheres 253.0
2532 Female, age 72, left hemisphere 212.8
2622 Female, age 67, right hemisphere 197.7
2018 Male, age 76, both hemispheres 113.2
2692 Male, age 74, both hemispheres 75.6
Perirhinal gyrus
nTPM: 420.4
1847 Female, age 91, left hemisphere 679.0
2521 Female, age 94, right hemisphere 526.1
1794 Male, age 80, right hemisphere 381.3
1841 Female, age 85, right hemisphere 360.7
2848 Male, age 76, right hemisphere 155.0
Subiculum
nTPM: 136.6
1977 Female, age 85, both hemispheres 256.6
1901 Male, age 80, both hemispheres 253.2
2438 Female, age 94, left hemisphere 168.0
2619 Male, age 74, both hemispheres 95.0
2042 Male, age 76, both hemispheres 26.8
2729 Female, age 91, right hemisphere 19.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 976.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 976.2
Samples: 197

Max nTPM: 3139.5
Min nTPM: 44.2
Std nTPM: 700.9
Median nTPM: 890.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3139.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 3081.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 2883.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 2552.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2539.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2380.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2290.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2285.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2261.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2215.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2211.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 2180.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 2178.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2160.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2081.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 2067.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 2045.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 2040.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1995.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1988.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1987.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1966.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1918.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1902.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1869.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1836.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1819.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1814.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1798.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 1792.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 1789.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1777.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1763.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1752.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1691.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1665.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1640.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1638.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1588.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1583.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1573.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1566.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1519.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 1516.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1505.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1502.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1463.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1460.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 1452.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1444.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1430.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1428.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1427.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1405.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1377.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1373.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1353.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1350.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1337.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1316.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1296.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1292.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1269.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1264.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 1229.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1221.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1220.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1219.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1190.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1188.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1161.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1159.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1159.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1158.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1147.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 1138.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 1135.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1115.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1103.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1101.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 1100.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 1085.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1063.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1055.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 1044.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 1020.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1016.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1007.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 998.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 993.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 989.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 988.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 968.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 966.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 962.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 927.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 907.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 904.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 890.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 885.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 880.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 862.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 858.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 850.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 848.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 843.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 815.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 811.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 787.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 786.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 782.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 772.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 744.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 732.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 721.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 713.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 698.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 678.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 648.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 648.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 618.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 590.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 586.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 576.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 570.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 566.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 546.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 535.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 514.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 513.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 510.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 504.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 496.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 480.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 467.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 461.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 453.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 440.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 437.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 436.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 434.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 432.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 391.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 370.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 356.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 339.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 333.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 330.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 325.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 324.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 317.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 309.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 308.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 306.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 304.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 292.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 290.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 287.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 274.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 271.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 271.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 270.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 269.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 243.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 235.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 204.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 202.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 198.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 186.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 174.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 170.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 164.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 160.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 155.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 152.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 152.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 149.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 148.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 144.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 133.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 129.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 118.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 117.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 117.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 109.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 106.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 103.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 103.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 96.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 95.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 95.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 93.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 92.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 62.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 57.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 49.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 44.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1716.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1716.3
FF:10169-103B7 60 years, female 2193.1
FF:10153-102I9 76 years, female 1239.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1075.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 842.1
Samples: 4

Max nTPM: 996.2
Min nTPM: 682.8
Sample A Female 996.2
Sample B Female 892.1
Sample C Male 797.3
Sample D Male 682.8
Entorhinal cortex
nTPM: 1075.8
Samples: 4

Max nTPM: 1262.8
Min nTPM: 900.6
Sample A Female 1094.8
Sample B Female 1262.8
Sample C Male 900.6
Sample D Male 1044.8
Subiculum
nTPM: 758.7
Samples: 4

Max nTPM: 992.4
Min nTPM: 638.7
Sample A Female 992.4
Sample B Female 638.7
Sample C Male 763.2
Sample D Male 640.4
Ventral hippocampus
nTPM: 712.3
Samples: 4

Max nTPM: 816.0
Min nTPM: 541.1
Sample A Female 816.0
Sample B Female 541.1
Sample C Male 722.5
Sample D Male 769.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2197.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2197.6
Samples: 4

Max nTPM: 2588.5
Min nTPM: 1977.2
Sample A Male 2243.7
Sample B Male 2588.5
Sample C Female 1981.0
Sample D Female 1977.2
Hippocampal formation
nTPM: 2029.6
Samples: 4

Max nTPM: 2236.3
Min nTPM: 1822.0
Sample A Male 2236.3
Sample B Male 1990.2
Sample C Female 2069.9
Sample D Female 1822.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 30.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 30.5
70919418 Antisense, RP_050713_01_C08, Mouse strain C57BL/6J (56 days, male) 30.5

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