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SNAP25
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:492.0 nTPM
GTEx:492.0 nTPM
FANTOM5:184.3 Scaled Tags Per Million
Pig:381.1 nTPM
Mouse:1484.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 492.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 492.0
Samples: 105

Max nTPM: 1134.9
Min nTPM: 301.3
Std nTPM: 116.1
Median nTPM:
2_1 77 years, female 1134.9
307_1 66 years, female 923.6
495_1 57 years, female 861.3
139_1 64 years, female 699.5
89_1 63 years, male 642.3
322_1 76 years, male 640.3
119_1 70 years, female 630.4
145_1 84 years, male 626.8
311_1 78 years, male 626.0
491_1 89 years, female 619.4
348_1 84 years, male 618.8
447_1 81 years, male 613.3
6_1 73 years, female 608.4
501_1 88 years, male 607.5
293_1 68 years, female 602.3
413_1 59 years, female 599.9
117_1 61 years, male 596.7
81_1 67 years, male 575.4
308_1 70 years, female 571.8
17_1 71 years, male 568.8
321_1 62 years, female 562.4
120_1 70 years, female 556.3
490_1 67 years, female 552.1
324_1 76 years, male 550.5
43_1 64 years, female 549.3
126_1 63 years, male 548.0
350_1 84 years, female 543.3
149_1 88 years, male 531.5
316_1 62 years, male 529.9
4_1 88 years, female 520.6
415_1 77 years, female 515.5
162_1 79 years, female 514.5
313_1 79 years, female 510.3
526_1 61 years, male 508.0
41_1 94 years, female 507.9
35_1 74 years, female 506.2
466_1 57 years, female 505.8
518_1 75 years, female 502.4
18_1 88 years, male 501.3
142_1 61 years, female 499.1
377_1 82 years, female 497.7
115_1 83 years, male 495.3
153_1 70 years, female 483.9
317_1 60 years, male 479.8
353_1 82 years, female 478.0
386_1 76 years, male 477.6
414_1 84 years, female 476.5
396_1 62 years, male 476.2
109_1 81 years, female 472.6
506_1 65 years, male 468.5
292_1 71 years, male 465.9
173_1 67 years, male 465.1
319_1 81 years, male 464.3
384_1 83 years, male 461.8
315_1 62 years, female 461.3
405_1 91 years, male 456.8
291_1 76 years, male 453.4
172_1 72 years, female 453.1
335_1 73 years, female 452.8
468_1 89 years, male 451.8
352_1 62 years, male 451.4
320_1 89 years, female 449.4
499_1 55 years, female 448.7
9_1 66 years, female 448.2
404_1 82 years, female 445.1
254_1 77 years, female 441.4
243_1 75 years, male 440.5
266_1 85 years, male 440.2
406_1 79 years, male 440.2
314_1 67 years, male 439.1
425_1 59 years, female 438.6
32_1 67 years, male 435.1
286_1 68 years, female 435.1
376_1 75 years, female 435.0
288_1 66 years, female 434.6
375_1 74 years, female 433.4
480_1 63 years, male 425.9
452_1 88 years, female 424.5
318_1 68 years, male 423.5
177_1 74 years, male 418.1
217_1 76 years, male 417.2
229_1 69 years, female 416.4
237_1 82 years, male 415.8
251_1 78 years, male 410.8
503_1 68 years, male 410.7
351_1 91 years, male 409.9
218_1 71 years, female 409.2
295_1 61 years, female 405.8
517_1 88 years, male 403.3
42_1 85 years, male 401.5
189_1 76 years, male 397.9
265_1 87 years, male 397.7
347_1 72 years, male 394.2
163_1 78 years, male 394.1
264_1 73 years, female 388.5
137_1 83 years, male 384.3
354_1 81 years, female 384.3
356_1 87 years, female 372.7
99_1 64 years, male 364.6
379_1 60 years, male 357.7
349_1 83 years, male 354.5
246_1 77 years, male 352.9
389_1 86 years, female 351.0
355_1 70 years, female 340.9
394_1 75 years, female 301.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 184.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 184.3
FF:10030-101E3 24-65 years, mixed 184.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 381.1
Pig sample Sample description nTPM
Retina
nTPM: 381.1
Samples: 4

Max nTPM: 407.7
Min nTPM: 354.5
Sample A Female 369.6
Sample B Female 407.7
Sample C Male 392.4
Sample D Male 354.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1484.5
Mouse sample Sample description nTPM
Retina
nTPM: 1484.5
Samples: 4

Max nTPM: 1566.6
Min nTPM: 1350.8
Sample A Male 1566.6
Sample B Male 1519.1
Sample C Female 1350.8
Sample D Female 1501.6

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by the Knut & Alice Wallenberg Foundation.