BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA:58.7 nTPM
GTEx:77.8 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:82.8 nTPM
Mouse:61.1 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.1
1781 Male, age 74, unknown 32.8
2846 Female, age 79, unknown 29.9
2290 Female, age 72, unknown 28.1
2481 Female, age 94, left hemisphere 23.2
2289 Male, age 61, right hemisphere 22.1
2288 Male, age 75, left hemisphere 19.5
1857 Female, age 85, left hemisphere 19.3
1854 Male, age 80, left hemisphere 18.1
Claustrum
nTPM: 45.8
2284 Female, age 91, both hemispheres 58.6
2568 Male, age 61, both hemispheres 58.5
2645 Female, age 72, unknown 58.1
2198 Male, age 80, both hemispheres 51.8
2491 Male, age 75, both hemispheres 51.1
1956 Male, age 74, unknown 35.5
2392 Female, age 94, both hemispheres 34.6
2292 Female, age 85, both hemispheres 33.9
2196 Female, age 79, unknown 30.5
Globus pallidus, externus
nTPM: 27.3
2567 Female, age 72, unknown 33.1
2772 Female, age 79, unknown 32.5
2646 Male, age 61, right hemisphere 29.8
1996 Male, age 80, right hemisphere 22.1
2395 Male, age 75, both hemispheres 19.0
Globus pallidus, internus
nTPM: 21.6
2566 Female, age 72, unknown 25.5
2483 Female, age 94, right hemisphere 24.1
1818 Male, age 74, unknown 24.0
2287 Male, age 75, right hemisphere 21.6
2037 Male, age 80, right hemisphere 19.9
2111 Female, age 85, right hemisphere 18.4
2778 Female, age 91, both hemispheres 17.9
Nucleus accumbens
nTPM: 22.2
1783 Male, age 74, unknown 28.3
1856 Female, age 91, right hemisphere 25.0
2698 Female, age 72, unknown 22.7
2732 Male, age 80, right hemisphere 22.6
1806 Female, age 85, left hemisphere 21.4
2824 Male, age 61, right hemisphere 20.2
2286 Male, age 75, left hemisphere 20.1
2391 Female, age 94, left hemisphere 17.1
Nucleus basalis of Meynert
nTPM: 24.1
2569 Male, age 61, both hemispheres 34.4
2484 Female, age 94, left hemisphere 25.0
2821 Male, age 75, both hemispheres 20.4
2393 Male, age 80, right hemisphere 16.7
Nucleus of the diagonal band
nTPM: 54.5
2029 Male, age 61, right hemisphere 63.3
2195 Female, age 85, both hemispheres 60.9
2775 Male, age 80, right hemisphere 60.2
1812 Female, age 91, both hemispheres 46.4
1979 Male, age 74, unknown 41.5
Olfactory tubercle
nTPM: 58.7
2487 Female, age 94, left hemisphere 66.6
1998 Female, age 91, both hemispheres 59.7
2856 Male, age 75, right hemisphere 56.7
1846 Male, age 80, right hemisphere 51.9
Putamen
nTPM: 26.2
2647 Male, age 75, left hemisphere 32.8
2489 Female, age 72, unknown 31.6
2466 Female, age 79, unknown 28.2
1829 Male, age 74, unknown 27.0
2482 Female, age 94, left hemisphere 22.9
1937 Female, age 91, right hemisphere 20.8
1838 Male, age 80, right hemisphere 19.9
Septal nuclei
nTPM: 50.4
1960 Male, age 74, unknown 64.2
2059 Female, age 85, both hemispheres 58.8
2031 Female, age 72, unknown 52.4
2629 Female, age 94, right hemisphere 49.9
2394 Male, age 61, left hemisphere 46.8
2009 Female, age 91, both hemispheres 43.8
2199 Male, age 80, right hemisphere 37.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.2
Samples: 246

Max nTPM: 149.5
Min nTPM: 30.3
Std nTPM: 19.3
Median nTPM: 67.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 149.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 121.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 115.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 114.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 114.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 113.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 113.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 113.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 109.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 107.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.8
Samples: 246

Max nTPM: 139.1
Min nTPM: 20.8
Std nTPM: 20.8
Median nTPM: 77.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 139.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 131.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 130.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 127.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 126.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 122.7
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 121.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 120.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 114.6
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 113.8
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 113.6
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Brain - Putamen (basal ganglia)
Average nTPM: 72.0
Samples: 205

Max nTPM: 129.1
Min nTPM: 35.1
Std nTPM: 17.8
Median nTPM: 69.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 129.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 124.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 121.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 118.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 117.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 117.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 113.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 111.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 111.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 108.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 106.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.2
FF:10164-103B2 76 years, female 45.2
Globus pallidus
Scaled Tags Per Million: 30.3
FF:10161-103A8 76 years, female 39.3
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 33.6
FF:10037-101F1 23-56 years, mixed 33.6
Putamen
Scaled Tags Per Million: 45.3
FF:10176-103C5 60 years, female 45.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 82.8
Pig sample Sample description nTPM
Caudate
nTPM: 81.3
Samples: 4

Max nTPM: 102.2
Min nTPM: 57.3
Sample A Female 57.3
Sample B Female 87.6
Sample C Male 102.2
Sample D Male 78.0
Putamen
nTPM: 82.8
Samples: 4

Max nTPM: 112.0
Min nTPM: 45.2
Sample A Female 45.2
Sample B Female 78.8
Sample C Male 112.0
Sample D Male 95.2
Septum
nTPM: 51.0
Samples: 4

Max nTPM: 59.4
Min nTPM: 43.5
Sample A Female 59.4
Sample B Female 57.0
Sample C Male 43.5
Sample D Male 43.9
Ventral pallidum
nTPM: 58.4
Samples: 4

Max nTPM: 59.4
Min nTPM: 56.6
Sample A Female 56.6
Sample B Female 59.4
Sample C Male 59.4
Sample D Male 58.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 61.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 57.3
Samples: 4

Max nTPM: 70.2
Min nTPM: 45.4
Sample A Male 59.8
Sample B Male 70.2
Sample C Female 45.4
Sample D Female 53.8
Septum
nTPM: 56.1
Samples: 4

Max nTPM: 59.8
Min nTPM: 53.6
Sample A Male 59.8
Sample B Male 53.6
Sample C Female 53.6
Sample D Female 57.3
Ventral forebrain
nTPM: 61.1
Samples: 4

Max nTPM: 65.7
Min nTPM: 56.5
Sample A Male 65.7
Sample B Male 60.3
Sample C Female 61.9
Sample D Female 56.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69169469 Antisense, RP_050321_03_F04, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.9
69169469 Antisense, RP_050321_03_F04, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

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