MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:69.1 nTPM
FANTOM5:26.8 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:38.1 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2586 Male, age 75, left hemisphere 64.4
2219 Male, age 76, both hemispheres 44.2
2828 Female, age 72, unknown 42.4
1827 Male, age 72, unknown 37.8
2666 Male, age 74, left hemisphere 35.1
2019 Male, age 18, unknown 34.6
1833 Male, age 53, unknown 29.4
2411 Female, age 72, unknown 26.9
1870 Female, age 42, unknown 26.0
1830 Male, age 51, unknown 23.4
Dorsal raphe nucleus
nTPM: 28.1
2047 Male, age 72, unknown 33.2
1828 Male, age 53, unknown 28.6
2298 Female, age 72, unknown 27.1
2750 Male, age 76, both hemispheres 26.0
2016 Female, age 72, unknown 25.7
Inferior colliculus
nTPM: 33.5
1848 Female, age 42, unknown 34.2
2849 Male, age 72, unknown 33.7
1890 Male, age 53, unknown 33.1
2097 Female, age 72, unknown 33.0
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Pedunculopontine tegmental nucleus
nTPM: 26.6
1921 Female, age 85, both hemispheres 32.3
2334 Male, age 80, both hemispheres 28.2
2338 Male, age 61, both hemispheres 19.5
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 42.9
1795 Male, age 51, unknown 42.1
1947 Male, age 18, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 28.1
1840 Male, age 53, unknown 37.8
2464 Female, age 72, unknown 31.7
1831 Male, age 72, unknown 26.5
2850 Male, age 76, both hemispheres 16.5
Periaquaductal grey, lateral
nTPM: 22.5
2053 Male, age 18, unknown 28.1
2272 Male, age 74, both hemispheres 20.9
2140 Male, age 76, both hemispheres 18.5
Pretectal area
nTPM: 37.3
1816 Male, age 51, unknown 53.1
2007 Male, age 72, unknown 52.3
1944 Female, age 72, unknown 51.8
1817 Female, age 42, unknown 49.6
1815 Male, age 53, unknown 40.4
2667 Female, age 75, unknown 36.1
2407 Male, age 75, both hemispheres 30.3
2224 Female, age 72, unknown 25.7
2825 Male, age 18, unknown 24.9
2316 Male, age 76, right hemisphere 24.2
2273 Male, age 74, both hemispheres 21.2
Red nucleus
nTPM: 27.7
2785 Male, age 18, unknown 39.5
2584 Male, age 75, left hemisphere 38.6
2588 Male, age 74, left hemisphere 32.0
2769 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 27.6
2227 Male, age 72, unknown 27.2
2725 Female, age 75, unknown 25.7
2823 Male, age 76, right hemisphere 24.6
1954 Female, age 42, unknown 22.9
1821 Female, age 72, unknown 22.8
1904 Male, age 53, unknown 22.6
1865 Male, age 51, unknown 20.6
Substantia nigra
nTPM: 39.1
2665 Male, age 74, both hemispheres 63.7
1916 Female, age 42, unknown 47.0
1889 Female, age 72, unknown 44.3
1851 Male, age 51, unknown 42.3
1941 Male, age 53, unknown 37.9
2583 Male, age 75, right hemisphere 37.4
2699 Male, age 18, unknown 34.2
2590 Female, age 75, unknown 32.7
2409 Female, age 72, unknown 29.2
2241 Male, age 72, unknown 22.2
Superior colliculus
nTPM: 36.5
2664 Male, age 75, both hemispheres 53.4
2087 Female, age 72, unknown 45.5
1796 Male, age 53, unknown 40.4
2668 Female, age 75, unknown 39.6
2261 Male, age 18, unknown 39.0
1995 Male, age 72, unknown 31.1
1839 Male, age 51, unknown 30.8
2587 Male, age 74, left hemisphere 29.4
1895 Male, age 76, right hemisphere 28.1
1913 Female, age 42, unknown 28.0
Ventral tegmental area
nTPM: 33.6
1942 Male, age 51, unknown 39.7
1915 Female, age 42, unknown 36.3
2218 Male, age 76, both hemispheres 36.1
2410 Female, age 72, unknown 35.5
2223 Female, age 72, unknown 27.2
2021 Male, age 53, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.1
Samples: 139

Max nTPM: 153.8
Min nTPM: 24.2
Std nTPM: 24.7
Median nTPM: 65.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 153.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 132.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 128.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 123.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 121.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 117.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 115.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 113.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 110.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 110.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.8
FF:10158-103A5 76 years, female 26.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 59.0
Min nTPM: 36.7
Sample A Female 42.6
Sample B Female 36.7
Sample C Male 59.0
Sample D Male 45.1
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 39.8
Min nTPM: 30.3
Sample B Female 35.7
Sample C Male 39.8
Sample D Male 30.3
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 32.5
Sample A Female 47.0
Sample B Female 35.7
Sample C Male 47.4
Sample D Male 32.5
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 49.1
Min nTPM: 44.1
Sample A Female 44.1
Sample B Female 44.8
Sample C Male 48.4
Sample D Male 49.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 44.3
Min nTPM: 34.3
Sample A Male 44.3
Sample B Male 34.6
Sample C Female 34.3
Sample D Female 39.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69169469 Antisense, RP_050321_03_F04, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.