BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.3 nTPM
HPA:6.3 nTPM
GTEx:20.5 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Mouse:19.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053769
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.4
2289 Male, age 61, right hemisphere 6.7
2288 Male, age 75, left hemisphere 6.1
2290 Female, age 72, unknown 6.0
2846 Female, age 79, unknown 4.8
1854 Male, age 80, left hemisphere 3.7
2481 Female, age 94, left hemisphere 3.3
1781 Male, age 74, unknown 2.7
1857 Female, age 85, left hemisphere 1.7
Claustrum
nTPM: 5.9
2292 Female, age 85, both hemispheres 7.9
2645 Female, age 72, unknown 7.0
2284 Female, age 91, both hemispheres 6.6
2198 Male, age 80, both hemispheres 6.5
2196 Female, age 79, unknown 6.2
2568 Male, age 61, both hemispheres 6.1
1956 Male, age 74, unknown 5.6
2491 Male, age 75, both hemispheres 5.5
2392 Female, age 94, both hemispheres 1.3
Globus pallidus, externus
nTPM: 6.2
2646 Male, age 61, right hemisphere 9.5
2567 Female, age 72, unknown 9.0
2772 Female, age 79, unknown 5.2
1996 Male, age 80, right hemisphere 4.8
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 6.3
2566 Female, age 72, unknown 10.3
2778 Female, age 91, both hemispheres 7.6
2287 Male, age 75, right hemisphere 6.7
2037 Male, age 80, right hemisphere 6.1
2111 Female, age 85, right hemisphere 5.1
1818 Male, age 74, unknown 4.0
2483 Female, age 94, right hemisphere 3.9
Nucleus accumbens
nTPM: 4.4
2732 Male, age 80, right hemisphere 6.3
2698 Female, age 72, unknown 5.7
1783 Male, age 74, unknown 5.2
1806 Female, age 85, left hemisphere 4.7
2824 Male, age 61, right hemisphere 3.6
2391 Female, age 94, left hemisphere 3.5
2286 Male, age 75, left hemisphere 3.0
1856 Female, age 91, right hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 5.5
2569 Male, age 61, both hemispheres 10.8
2484 Female, age 94, left hemisphere 4.6
2821 Male, age 75, both hemispheres 3.5
2393 Male, age 80, right hemisphere 3.2
Nucleus of the diagonal band
nTPM: 3.8
1979 Male, age 74, unknown 5.2
2195 Female, age 85, both hemispheres 4.8
2029 Male, age 61, right hemisphere 3.8
2775 Male, age 80, right hemisphere 3.2
1812 Female, age 91, both hemispheres 2.1
Olfactory tubercle
nTPM: 2.8
1998 Female, age 91, both hemispheres 3.4
2856 Male, age 75, right hemisphere 3.3
2487 Female, age 94, left hemisphere 2.9
1846 Male, age 80, right hemisphere 1.5
Putamen
nTPM: 4.9
2489 Female, age 72, unknown 6.8
1829 Male, age 74, unknown 6.2
2647 Male, age 75, left hemisphere 6.2
1838 Male, age 80, right hemisphere 4.5
2482 Female, age 94, left hemisphere 3.8
1937 Female, age 91, right hemisphere 3.7
2466 Female, age 79, unknown 3.2
Septal nuclei
nTPM: 3.4
2394 Male, age 61, left hemisphere 4.5
2059 Female, age 85, both hemispheres 4.3
2629 Female, age 94, right hemisphere 3.9
1960 Male, age 74, unknown 3.4
2199 Male, age 80, right hemisphere 3.2
2009 Female, age 91, both hemispheres 2.9
2031 Female, age 72, unknown 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 37.9
Min nTPM: 4.8
Std nTPM: 5.0
Median nTPM: 18.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 31.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 30.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 30.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 29.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 29.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 29.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 28.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 27.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.9
Samples: 246

Max nTPM: 38.3
Min nTPM: 7.3
Std nTPM: 5.7
Median nTPM: 19.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 38.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 35.4
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 34.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 34.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 33.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 33.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 33.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 33.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 32.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 31.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 31.7
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Brain - Putamen (basal ganglia)
Average nTPM: 20.5
Samples: 205

Max nTPM: 35.8
Min nTPM: 3.3
Std nTPM: 5.3
Median nTPM: 20.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 35.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 34.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 33.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 33.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 33.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 31.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 30.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 30.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 30.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 30.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 30.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.4
FF:10164-103B2 76 years, female 36.4
Globus pallidus
Scaled Tags Per Million: 30.4
FF:10161-103A8 76 years, female 44.2
FF:10175-103C4 60 years, female 16.5
Nucleus accumbens
Scaled Tags Per Million: 44.9
FF:10037-101F1 23-56 years, mixed 44.9
Putamen
Scaled Tags Per Million: 52.9
FF:10176-103C5 60 years, female 52.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.7
Samples: 4

Max nTPM: 20.9
Min nTPM: 17.5
Sample A Male 19.8
Sample B Male 20.9
Sample C Female 20.6
Sample D Female 17.5
Septum
nTPM: 19.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.8
Sample A Male 24.1
Sample B Male 18.2
Sample C Female 16.8
Sample D Female 18.1
Ventral forebrain
nTPM: 19.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 17.9
Sample A Male 17.9
Sample B Male 18.3
Sample C Female 21.8
Sample D Female 20.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68920701 Antisense, RP_050303_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68920701 Antisense, RP_050303_01_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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