MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:16.7 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Mouse:16.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.9
2586 Male, age 75, left hemisphere 8.6
2666 Male, age 74, left hemisphere 5.9
1870 Female, age 42, unknown 5.6
2828 Female, age 72, unknown 5.6
2219 Male, age 76, both hemispheres 4.8
1830 Male, age 51, unknown 4.5
1833 Male, age 53, unknown 4.0
2019 Male, age 18, unknown 3.4
2411 Female, age 72, unknown 3.4
1827 Male, age 72, unknown 3.0
Dorsal raphe nucleus
nTPM: 2.8
2750 Male, age 76, both hemispheres 4.9
2047 Male, age 72, unknown 3.2
1828 Male, age 53, unknown 2.9
2016 Female, age 72, unknown 2.3
2298 Female, age 72, unknown 0.6
Inferior colliculus
nTPM: 3.4
2849 Male, age 72, unknown 5.0
1890 Male, age 53, unknown 4.1
1848 Female, age 42, unknown 2.6
2097 Female, age 72, unknown 1.8
Median raphe nucleus
nTPM: 3.5
2220 Male, age 76, midline 3.5
Pedunculopontine tegmental nucleus
nTPM: 3.1
2334 Male, age 80, both hemispheres 4.1
1921 Female, age 85, both hemispheres 3.5
2338 Male, age 61, both hemispheres 1.8
Periaquaductal grey, anterior
nTPM: 4.6
2502 Female, age 75, unknown 5.5
1795 Male, age 51, unknown 4.8
1947 Male, age 18, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 2.4
1831 Male, age 72, unknown 4.0
2850 Male, age 76, both hemispheres 2.7
2464 Female, age 72, unknown 2.0
1840 Male, age 53, unknown 0.9
Periaquaductal grey, lateral
nTPM: 3.7
2053 Male, age 18, unknown 4.4
2272 Male, age 74, both hemispheres 3.8
2140 Male, age 76, both hemispheres 3.0
Pretectal area
nTPM: 3.4
2407 Male, age 75, both hemispheres 5.6
2825 Male, age 18, unknown 4.5
1815 Male, age 53, unknown 3.9
2316 Male, age 76, right hemisphere 3.8
2007 Male, age 72, unknown 3.4
2667 Female, age 75, unknown 3.2
1816 Male, age 51, unknown 3.0
1817 Female, age 42, unknown 2.8
2224 Female, age 72, unknown 2.7
2273 Male, age 74, both hemispheres 2.2
1944 Female, age 72, unknown 1.9
Red nucleus
nTPM: 5.6
2584 Male, age 75, left hemisphere 8.2
2588 Male, age 74, left hemisphere 7.0
2785 Male, age 18, unknown 6.9
2769 Male, age 72, unknown 6.8
2503 Female, age 72, unknown 6.6
1865 Male, age 51, unknown 6.2
1904 Male, age 53, unknown 5.2
2227 Male, age 72, unknown 5.2
2823 Male, age 76, right hemisphere 4.9
2725 Female, age 75, unknown 3.9
1954 Female, age 42, unknown 3.8
1821 Female, age 72, unknown 2.4
Substantia nigra
nTPM: 2.9
2583 Male, age 75, right hemisphere 5.3
2699 Male, age 18, unknown 4.3
2665 Male, age 74, both hemispheres 3.8
2590 Female, age 75, unknown 3.7
1941 Male, age 53, unknown 3.4
1851 Male, age 51, unknown 2.6
1916 Female, age 42, unknown 2.5
1889 Female, age 72, unknown 2.1
2409 Female, age 72, unknown 0.8
2241 Male, age 72, unknown 0.0
Superior colliculus
nTPM: 3.8
1913 Female, age 42, unknown 7.0
2664 Male, age 75, both hemispheres 5.5
1995 Male, age 72, unknown 4.7
1796 Male, age 53, unknown 4.0
1895 Male, age 76, right hemisphere 3.9
2587 Male, age 74, left hemisphere 3.6
1839 Male, age 51, unknown 3.5
2668 Female, age 75, unknown 3.4
2261 Male, age 18, unknown 1.6
2087 Female, age 72, unknown 1.2
Ventral tegmental area
nTPM: 3.7
2223 Female, age 72, unknown 5.2
2218 Male, age 76, both hemispheres 4.2
1942 Male, age 51, unknown 3.8
2021 Male, age 53, unknown 3.6
2410 Female, age 72, unknown 2.7
1915 Female, age 42, unknown 2.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 43.4
Min nTPM: 7.7
Std nTPM: 4.7
Median nTPM: 16.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 33.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 28.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 28.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 27.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 25.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 24.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 24.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 23.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 18.6
Min nTPM: 14.4
Sample A Male 18.6
Sample B Male 14.4
Sample C Female 16.4
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68920701 Antisense, RP_050303_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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