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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:361.4 nTPM
HPA:361.4 nTPM
GTEx:378.3 nTPM
FANTOM5:537.8 Scaled Tags Per Million
Pig:300.2 nTPM
Mouse:678.6 nTPM
Allen mouse:27.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 361.4
Sample id Sample description nTPM
Amygdala
nTPM: 284.2
2814 Male, age 76, right hemisphere 318.8
2514 Male, age 75, right hemisphere 302.2
1987 Female, age 91, left hemisphere 300.4
2517 Female, age 94, left hemisphere 267.9
2695 Female, age 67, right hemisphere 231.6
Basal amygdala
nTPM: 281.6
2110 Male, age 80, left hemisphere 326.1
2243 Female, age 91, right hemisphere 313.5
1955 Male, age 76, both hemispheres 300.6
2685 Female, age 94, left hemisphere 293.2
2609 Male, age 75, right hemisphere 270.1
2827 Female, age 67, right hemisphere 186.2
Central amygdala
nTPM: 279.1
2239 Male, age 80, left hemisphere 317.7
1905 Male, age 76, both hemispheres 292.1
2826 Female, age 94, left hemisphere 269.0
2701 Female, age 91, right hemisphere 264.6
2515 Male, age 75, right hemisphere 252.1
Corticomedial amygdala
nTPM: 289.8
2829 Male, age 80, left hemisphere 361.8
2429 Female, age 94, left hemisphere 306.1
2242 Female, age 91, right hemisphere 304.2
2240 Male, age 76, both hemispheres 288.8
2428 Male, age 75, right hemisphere 278.7
2535 Female, age 67, right hemisphere 199.4
Lateral amygdala
nTPM: 262.6
1883 Male, age 76, both hemispheres 330.0
2534 Female, age 94, left hemisphere 316.1
2516 Male, age 75, right hemisphere 263.7
2256 Male, age 80, left hemisphere 250.4
2255 Female, age 91, right hemisphere 239.9
2830 Female, age 67, right hemisphere 175.3
Stria terminalis, bed nucleus
nTPM: 361.4
1974 Female, age 91, both hemispheres 439.9
2486 Female, age 94, both hemispheres 375.5
2201 Male, age 74, unknown 268.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 378.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 378.3
Samples: 152

Max nTPM: 922.7
Min nTPM: 54.7
Std nTPM: 139.5
Median nTPM: 370.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 922.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 859.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 727.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 688.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 685.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 622.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 615.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 615.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 606.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 602.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 590.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 585.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 582.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 570.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 570.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 569.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 554.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 543.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 539.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 537.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 521.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 518.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 509.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 492.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 490.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 486.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 479.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 479.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 477.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 473.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 470.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 469.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 463.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 458.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 458.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 457.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 456.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 453.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 451.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 446.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 444.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 444.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 443.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 441.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 441.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 439.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 439.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 435.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 432.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 431.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 431.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 426.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 425.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 421.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 420.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 418.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 417.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 417.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 415.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 414.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 411.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 410.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 410.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 408.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 405.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 399.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 395.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 395.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 390.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 389.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 384.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 384.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 384.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 380.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 372.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 370.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 370.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 367.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 366.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 363.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 362.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 361.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 355.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 353.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 350.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 349.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 348.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 348.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 347.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 340.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 339.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 336.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 327.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 323.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 322.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 317.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 317.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 316.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 316.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 312.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 310.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 309.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 299.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 298.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 297.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 296.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 296.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 296.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 294.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 293.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 292.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 289.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 282.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 278.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 277.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 273.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 267.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 267.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 265.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 263.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 261.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 247.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 247.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 246.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 246.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 242.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 240.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 240.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 237.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 235.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 228.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 228.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 225.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 224.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 220.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 217.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 212.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 209.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 205.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 203.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 202.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 193.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 178.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 175.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 172.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 169.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 167.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 128.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 537.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 537.8
FF:10151-102I7 76 years, female 537.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 300.2
Pig sample Sample description nTPM
Amygdala
nTPM: 300.2
Samples: 4

Max nTPM: 422.9
Min nTPM: 234.9
Sample A Female 422.9
Sample B Female 234.9
Sample C Male 256.3
Sample D Male 286.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 678.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 678.6
Samples: 4

Max nTPM: 726.4
Min nTPM: 633.6
Sample A Male 726.4
Sample B Male 633.6
Sample C Female 677.9
Sample D Female 676.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.5
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 27.5
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 27.5

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