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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:334.0 nTPM
HPA:334.0 nTPM
FANTOM5:523.9 Scaled Tags Per Million
Pig:414.2 nTPM
Mouse:659.1 nTPM
Allen mouse:24.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 334.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 263.5
2032 Female, age 42, unknown 307.4
2497 Male, age 66, unknown 245.7
2396 Male, age 61, right hemisphere 237.4
Centromedial thalamic nucleus
nTPM: 257.5
2401 Male, age 76, right hemisphere 341.7
2279 Female, age 85, left hemisphere 173.2
Habenula
nTPM: 334.0
1957 Male, age 80, both hemispheres 401.1
2203 Male, age 61, left hemisphere 380.7
2276 Male, age 66, unknown 279.7
2252 Male, age 62, unknown 274.6
Lateral geniculate body
nTPM: 329.2
2106 Female, age 67, right hemisphere 460.4
1953 Male, age 62, unknown 371.1
2399 Male, age 61, left hemisphere 357.8
2035 Female, age 72, unknown 350.5
2575 Female, age 94, right hemisphere 316.3
2841 Male, age 80, both hemispheres 295.4
2659 Male, age 66, unknown 241.7
2857 Male, age 74, right hemisphere 240.6
Lateral thalamic nuclei
nTPM: 309.2
2765 Female, age 67, both hemispheres 404.9
1903 Male, age 76, left hemisphere 329.1
2577 Male, age 74, both hemispheres 303.7
2573 Female, age 94, left hemisphere 291.4
2661 Female, age 72, unknown 217.0
Medial dorsal thalamic nucleus
nTPM: 305.1
1971 Male, age 61, right hemisphere 366.6
2498 Male, age 66, unknown 354.1
1859 Male, age 76, both hemispheres 330.1
2026 Male, age 62, unknown 321.8
1810 Male, age 48, unknown 313.4
2039 Female, age 72, unknown 307.7
2283 Male, age 80, right hemisphere 299.2
2402 Female, age 67, both hemispheres 297.8
2492 Male, age 75, right hemisphere 290.0
2576 Male, age 74, both hemispheres 288.7
1930 Female, age 42, unknown 285.1
2572 Female, age 94, right hemisphere 281.1
2660 Female, age 72, unknown 231.0
Medial geniculate body
nTPM: 263.0
1811 Female, age 42, unknown 305.3
2657 Male, age 74, right hemisphere 275.4
2650 Female, age 94, left hemisphere 268.6
2207 Male, age 80, right hemisphere 257.8
2049 Male, age 76, both hemispheres 256.0
2217 Female, age 72, unknown 241.5
2571 Male, age 75, right hemisphere 236.3
Nucleus reuniens
nTPM: 292.6
2212 Female, age 67, left hemisphere 395.1
2205 Male, age 80, left hemisphere 267.4
2210 Female, age 85, left hemisphere 215.4
Nucleus rhomboideus
nTPM: 251.1
2206 Male, age 80, both hemispheres 325.2
2213 Female, age 67, left hemisphere 235.8
2280 Female, age 85, left hemisphere 192.3
Posterior thalamic nucleus
nTPM: 252.4
2266 Male, age 76, right hemisphere 275.9
2649 Female, age 94, both hemispheres 260.7
2495 Female, age 67, right hemisphere 253.0
2655 Male, age 74, right hemisphere 220.0
Pulvinar
nTPM: 300.5
2398 Male, age 61, left hemisphere 361.7
1972 Male, age 62, unknown 361.6
1932 Male, age 80, right hemisphere 335.9
1929 Male, age 48, unknown 304.4
2214 Male, age 76, right hemisphere 296.2
1899 Female, age 42, unknown 291.8
2496 Female, age 67, right hemisphere 273.9
2724 Male, age 74, right hemisphere 265.2
2499 Male, age 66, unknown 259.2
2582 Female, age 72, unknown 255.1
Subthalamic nucleus
nTPM: 299.2
2124 Male, age 62, unknown 333.7
2275 Male, age 66, unknown 331.0
2406 Female, age 72, unknown 328.2
2658 Male, age 74, both hemispheres 311.3
2282 Male, age 61, both hemispheres 306.9
2779 Female, age 42, unknown 274.5
2056 Female, age 72, unknown 264.8
2216 Male, age 48, unknown 243.2
Ventral posterolateral thalamic nucleus
nTPM: 291.1
2740 Male, age 76, right hemisphere 341.4
2397 Male, age 61, right hemisphere 318.0
2578 Male, age 74, both hemispheres 297.0
2197 Male, age 80, both hemispheres 295.5
2570 Male, age 75, right hemisphere 292.9
2581 Female, age 72, unknown 201.6
Ventral posteromedial thalamic nucleus
nTPM: 302.5
2202 Male, age 61, left hemisphere 345.1
2653 Male, age 74, both hemispheres 334.9
2281 Male, age 75, right hemisphere 288.6
2758 Male, age 80, both hemispheres 278.8
2127 Male, age 76, right hemisphere 265.2
Ventral thalamic nuclei
nTPM: 288.1
1845 Male, age 48, unknown 333.0
1860 Male, age 76, both hemispheres 329.7
2652 Male, age 74, left hemisphere 307.5
1912 Female, age 42, unknown 297.8
2580 Male, age 66, unknown 281.6
2285 Male, age 62, unknown 271.7
2291 Female, age 72, unknown 266.6
2204 Male, age 80, both hemispheres 258.3
2858 Female, age 72, unknown 246.4
Ventromedial nucleus
nTPM: 295.5
1982 Female, age 72, unknown 325.3
1822 Female, age 42, unknown 265.6
Zona incerta
nTPM: 281.1
2215 Male, age 66, unknown 354.8
2822 Male, age 74, right hemisphere 302.2
2403 Male, age 62, unknown 262.7
2208 Male, age 80, right hemisphere 254.9
2663 Female, age 72, unknown 230.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 523.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 523.9
FF:10154-103A1 76 years, female 523.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 414.2
Pig sample Sample description nTPM
Thalamus
nTPM: 414.3
Samples: 4

Max nTPM: 537.3
Min nTPM: 311.1
Sample A Female 537.3
Sample B Female 343.7
Sample C Male 464.9
Sample D Male 311.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 659.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 659.1
Samples: 4

Max nTPM: 734.0
Min nTPM: 600.8
Sample A Male 602.1
Sample B Male 734.0
Sample C Female 600.8
Sample D Female 699.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 24.7
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 24.7
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 24.6

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