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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:404.5 nTPM
HPA:404.5 nTPM
FANTOM5:493.8 Scaled Tags Per Million
Pig:365.3 nTPM
Allen mouse:18.5 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 404.5
Sample id Sample description nTPM
Area postrema
nTPM: 211.3
2054 Male, age 76, both hemispheres 241.3
2306 Male, age 80, both hemispheres 208.1
2799 Male, age 61, both hemispheres 184.6
Cuneate nuclei
nTPM: 278.8
2131 Male, age 76, both hemispheres 311.2
2376 Male, age 61, both hemispheres 278.3
2381 Male, age 80, both hemispheres 247.0
Dorsal medullary reticular nucleus
nTPM: 298.6
2040 Female, age 85, both hemispheres 415.2
2373 Male, age 61, both hemispheres 246.2
2088 Male, age 76, both hemispheres 234.3
Dorsal motor vagal complex
nTPM: 251.6
2000 Male, age 74, unknown 323.0
2133 Female, age 91, both hemispheres 322.4
2844 Male, age 55, unknown 287.4
2813 Female, age 72, unknown 275.4
2643 Male, age 74, both hemispheres 206.7
2185 Male, age 76, both hemispheres 206.5
2797 Male, age 61, both hemispheres 197.9
2807 Female, age 85, both hemispheres 193.2
Gigantocellular reticular nuclei, medullary
nTPM: 311.8
2462 Male, age 74, both hemispheres 368.6
1876 Female, age 85, both hemispheres 349.7
2387 Female, age 91, both hemispheres 309.3
2022 Male, age 76, right hemisphere 302.4
2310 Male, age 80, both hemispheres 276.3
2314 Male, age 61, both hemispheres 264.7
Gigantocellular reticular nuclei, pars
nTPM: 313.0
2168 Male, age 76, both hemispheres 409.1
2084 Female, age 85, both hemispheres 332.6
2336 Male, age 61, both hemispheres 304.2
2706 Male, age 80, both hemispheres 265.3
2330 Male, age 80, both hemispheres 253.6
Inferior olive
nTPM: 265.2
2563 Male, age 74, both hemispheres 340.5
2628 Female, age 91, both hemispheres 266.4
2085 Female, age 85, both hemispheres 266.0
2178 Male, age 61, both hemispheres 236.4
2379 Male, age 80, both hemispheres 216.8
Lateral medullary reticular nucleus
nTPM: 305.8
2305 Male, age 74, both hemispheres 396.5
2044 Male, age 76, both hemispheres 375.7
2804 Female, age 91, both hemispheres 287.7
2190 Female, age 85, both hemispheres 265.6
2852 Male, age 80, both hemispheres 254.8
2374 Male, age 61, both hemispheres 254.4
Medial vestibular nucleus
nTPM: 350.6
2801 Male, age 74, both hemispheres 417.9
2803 Female, age 91, both hemispheres 375.5
2743 Female, age 85, both hemispheres 333.0
2093 Male, age 80, both hemispheres 330.6
2624 Male, age 61, both hemispheres 325.5
2134 Male, age 76, both hemispheres 321.4
Motor hypoglossal nucleus
nTPM: 297.6
2125 Female, age 91, both hemispheres 360.5
2132 Female, age 85, both hemispheres 330.1
2461 Male, age 61, both hemispheres 308.9
2182 Male, age 80, both hemispheres 257.2
2277 Male, age 76, both hemispheres 231.3
Nucleus ambiguus
nTPM: 258.7
2096 Female, age 85, both hemispheres 273.2
2071 Male, age 76, both hemispheres 244.1
Nucleus cuneatus
nTPM: 244.3
2564 Male, age 74, both hemispheres 296.1
2100 Male, age 76, both hemispheres 261.0
2562 Male, age 61, both hemispheres 251.1
2380 Male, age 80, both hemispheres 235.8
2808 Female, age 85, both hemispheres 226.2
2805 Female, age 91, both hemispheres 195.6
Nucleus gracilis
nTPM: 246.7
2627 Male, age 74, both hemispheres 326.8
2382 Male, age 80, both hemispheres 228.5
2299 Female, age 85, both hemispheres 184.7
Nucleus raphe magnus
nTPM: 404.5
2160 Male, age 61, both hemispheres 594.7
2172 Female, age 85, both hemispheres 441.3
2455 Male, age 74, both hemispheres 410.5
2051 Male, age 76, both hemispheres 360.2
2328 Male, age 80, both hemispheres 324.6
2459 Female, age 91, both hemispheres 295.7
Nucleus raphe obscurus
nTPM: 282.7
2845 Female, age 85, midline 323.3
2800 Male, age 61, midline 309.5
2142 Male, age 76, midline 215.4
Nucleus raphe pallidus
nTPM: 280.8
2183 Male, age 80, midline 317.2
1924 Male, age 61, midline 300.7
2145 Male, age 76, midline 224.6
Nucleus tractus solitarii
nTPM: 248.1
2144 Female, age 91, right hemisphere 328.8
2656 Male, age 76, both hemispheres 256.8
2191 Female, age 85, both hemispheres 214.8
2307 Male, age 80, both hemispheres 192.0
Parvicellular reticular nuclei
nTPM: 318.3
2119 Male, age 80, both hemispheres 324.0
2558 Male, age 74, both hemispheres 316.6
2095 Male, age 76, both hemispheres 314.4
Parvicellular reticular nuclei, medullary
nTPM: 316.3
2189 Female, age 91, both hemispheres 350.1
2091 Female, age 85, both hemispheres 308.3
2181 Male, age 80, left hemisphere 290.6
Peritrigeminal nucleus
nTPM: 322.0
2179 Male, age 61, both hemispheres 353.5
2136 Male, age 76, both hemispheres 318.5
2067 Female, age 85, both hemispheres 293.9
Prepositus hypoglossal nucleus
nTPM: 304.9
2855 Female, age 85, right hemisphere 357.4
2086 Male, age 80, both hemispheres 252.4
Spinal trigeminal nucleus, caudal
nTPM: 299.0
2390 Female, age 91, both hemispheres 409.9
2447 Male, age 76, both hemispheres 310.7
2642 Male, age 74, both hemispheres 262.5
2312 Male, age 61, both hemispheres 262.2
2308 Male, age 80, both hemispheres 249.7
Spinal trigeminal nucleus, interpolar
nTPM: 368.3
2625 Male, age 61, both hemispheres 478.0
2066 Male, age 76, right hemisphere 392.4
2033 Male, age 80, both hemispheres 330.3
2389 Female, age 91, both hemispheres 328.2
2386 Female, age 85, both hemispheres 312.4
Spinal vestibular nucleus
nTPM: 310.4
2186 Female, age 91, both hemispheres 354.7
2806 Female, age 85, both hemispheres 334.3
2780 Male, age 80, both hemispheres 319.9
2796 Male, age 61, both hemispheres 301.0
2748 Male, age 76, both hemispheres 287.7
2384 Male, age 74, both hemispheres 265.0
Ventral medullary reticular nucleus
nTPM: 265.1
2060 Male, age 76, both hemispheres 274.9
2372 Male, age 61, both hemispheres 255.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 295.4
1986 Male, age 76, both hemispheres 333.8
2741 Female, age 85, both hemispheres 330.0
2180 Male, age 61, both hemispheres 299.7
2302 Female, age 91, both hemispheres 270.2
2118 Male, age 80, both hemispheres 243.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 493.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 493.8
FF:10038-101F2 18-64 years, mixed 718.3
FF:10155-103A2 76 years, female 473.1
FF:10174-103C3 60 years, female 290.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 365.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 365.3
Samples: 4

Max nTPM: 441.8
Min nTPM: 289.1
Sample A Female 441.8
Sample B Female 357.8
Sample C Male 372.6
Sample D Male 289.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 18.5
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 19.4
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 17.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.