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YWHAQ
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:190.8 nTPM
HPA:190.8 nTPM
GTEx:242.7 nTPM
FANTOM5:266.4 Scaled Tags Per Million
Pig:231.5 nTPM
Mouse:393.1 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 190.8
Sample id Sample description nTPM
Amygdala
nTPM: 190.8
2814 Male, age 76, right hemisphere 209.9
2514 Male, age 75, right hemisphere 196.9
1987 Female, age 91, left hemisphere 184.0
2695 Female, age 67, right hemisphere 182.5
2517 Female, age 94, left hemisphere 180.7
Basal amygdala
nTPM: 187.7
2110 Male, age 80, left hemisphere 219.0
2685 Female, age 94, left hemisphere 189.0
1955 Male, age 76, both hemispheres 184.7
2243 Female, age 91, right hemisphere 178.9
2609 Male, age 75, right hemisphere 178.8
2827 Female, age 67, right hemisphere 175.6
Central amygdala
nTPM: 185.3
2826 Female, age 94, left hemisphere 198.5
1905 Male, age 76, both hemispheres 191.2
2239 Male, age 80, left hemisphere 186.7
2515 Male, age 75, right hemisphere 177.5
2701 Female, age 91, right hemisphere 172.5
Corticomedial amygdala
nTPM: 185.4
2829 Male, age 80, left hemisphere 210.0
2240 Male, age 76, both hemispheres 187.8
2429 Female, age 94, left hemisphere 184.0
2428 Male, age 75, right hemisphere 181.2
2242 Female, age 91, right hemisphere 180.0
2535 Female, age 67, right hemisphere 169.6
Lateral amygdala
nTPM: 184.9
1883 Male, age 76, both hemispheres 196.6
2534 Female, age 94, left hemisphere 195.8
2516 Male, age 75, right hemisphere 194.2
2830 Female, age 67, right hemisphere 181.7
2256 Male, age 80, left hemisphere 170.7
2255 Female, age 91, right hemisphere 170.5
Stria terminalis, bed nucleus
nTPM: 180.3
1974 Female, age 91, both hemispheres 188.5
2201 Male, age 74, unknown 177.8
2486 Female, age 94, both hemispheres 174.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 242.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 242.7
Samples: 152

Max nTPM: 428.7
Min nTPM: 94.3
Std nTPM: 54.5
Median nTPM: 233.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 428.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 393.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 392.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 384.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 379.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 373.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 351.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 349.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 349.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 344.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 332.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 332.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 327.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 325.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 322.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 315.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 311.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 307.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 307.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 300.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 299.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 299.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 299.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 298.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 296.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 296.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 293.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 287.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 285.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 284.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 283.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 281.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 277.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 277.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 277.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 276.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 275.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 274.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 271.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 265.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 262.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 262.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 261.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 261.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 261.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 261.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 260.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 259.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 257.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 257.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 252.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 252.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 249.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 247.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 246.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 246.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 246.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 246.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 245.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 244.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 243.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 242.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 241.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 240.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 238.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 237.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 237.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 237.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 237.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 237.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 235.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 235.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 234.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 234.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 233.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 232.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 232.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 232.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 230.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 230.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 229.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 226.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 226.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 226.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 225.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 224.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 224.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 223.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 223.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 221.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 219.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 217.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 217.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 216.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 215.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 214.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 214.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 213.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 213.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 213.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 212.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 212.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 211.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 208.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 207.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 206.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 206.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 206.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 203.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 203.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 202.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 202.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 201.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 201.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 200.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 199.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 199.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 199.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 198.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 194.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 193.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 192.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 191.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 190.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 188.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 185.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 185.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 184.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 184.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 183.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 182.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 182.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 181.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 181.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 178.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 175.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 174.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 165.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 162.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 160.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 151.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 94.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 266.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 266.4
FF:10151-102I7 76 years, female 266.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 231.5
Pig sample Sample description nTPM
Amygdala
nTPM: 231.5
Samples: 4

Max nTPM: 314.1
Min nTPM: 186.3
Sample A Female 314.1
Sample B Female 229.9
Sample C Male 186.3
Sample D Male 195.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 393.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 393.1
Samples: 4

Max nTPM: 404.0
Min nTPM: 379.9
Sample A Male 404.0
Sample B Male 403.9
Sample C Female 379.9
Sample D Female 384.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
1130 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 8.6
1131 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 7.0
73931419 Antisense, RP_051214_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0
70566163 Antisense, RP_050628_02_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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