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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:203.9 nTPM
HPA:203.9 nTPM
GTEx:249.6 nTPM
FANTOM5:184.2 Scaled Tags Per Million
Pig:416.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 203.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.2
1981 Female, age 72, midline 205.5
2048 Male, age 55, midline 186.7
2194 Female, age 79, both hemispheres 183.5
2565 Male, age 75, midline 182.2
2816 Male, age 47, midline 173.2
Cervical spinal cord, dorsal horn
nTPM: 203.9
2173 Female, age 72, unknown 231.7
2296 Male, age 66, both hemispheres 226.8
2069 Male, age 47, both hemispheres 215.5
1877 Male, age 55, unknown 193.4
2297 Male, age 75, both hemispheres 191.5
2721 Male, age 90, both hemispheres 164.7
Cervical spinal cord, ventral horn
nTPM: 185.7
2480 Male, age 75, both hemispheres 201.9
2098 Female, age 72, unknown 191.1
2809 Male, age 90, both hemispheres 190.6
2295 Male, age 66, both hemispheres 179.0
2068 Male, age 55, unknown 177.5
2820 Female, age 79, both hemispheres 174.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 249.6
Samples: 159

Max nTPM: 510.6
Min nTPM: 154.8
Std nTPM: 50.2
Median nTPM: 244.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 510.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 438.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 391.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 366.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 363.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 342.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 327.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 326.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 324.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 324.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 320.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 310.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 310.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 309.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 305.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 303.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 302.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 302.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 301.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 301.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 296.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 295.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 294.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 293.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 291.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 291.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 290.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 289.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 288.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 287.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 286.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 285.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 284.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 284.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 283.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 283.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 282.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 282.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 280.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 279.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 279.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 277.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 276.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 274.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 273.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 272.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 268.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 268.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 268.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 265.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 265.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 264.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 263.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 263.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 260.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 259.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 259.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 258.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 258.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 258.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 257.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 257.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 257.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 257.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 256.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 254.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 254.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 254.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 251.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 251.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 250.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 250.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 249.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 248.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 248.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 247.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 245.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 245.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 245.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 244.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 243.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 242.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 242.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 241.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 241.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 241.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 239.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 238.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 237.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 237.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 237.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 236.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 236.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 234.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 234.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 234.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 233.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 233.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 233.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 232.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 231.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 231.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 231.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 231.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 230.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 229.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 229.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 229.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 228.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 227.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 225.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 225.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 225.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 225.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 222.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 218.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 218.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 217.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 216.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 215.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 215.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 213.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 210.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 210.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 210.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 210.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 209.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 208.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 208.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 207.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 206.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 203.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 202.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 201.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 201.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 200.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 199.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 199.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 198.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 198.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 196.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 194.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 192.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 192.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 191.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 190.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 190.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 188.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 187.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 187.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 179.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 173.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 172.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 171.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 165.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 165.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 163.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 159.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 154.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 184.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 184.2
FF:10181-103D1 60 years, female 196.0
FF:10159-103A6 76 years, female 172.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 416.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 380.7
Samples: 4

Max nTPM: 393.1
Min nTPM: 361.3
Sample A Female 393.1
Sample B Female 384.7
Sample C Male 361.3
Sample D Male 383.8
Ventral spinal cord
nTPM: 416.9
Samples: 4

Max nTPM: 439.8
Min nTPM: 394.1
Sample A Female 396.2
Sample B Female 439.8
Sample C Male 394.1
Sample D Male 437.5

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