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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:212.4 nTPM
HPA:212.4 nTPM
FANTOM5:350.9 Scaled Tags Per Million
Pig:384.6 nTPM
Allen mouse:1.4 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 212.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 182.6
2188 Female, age 91, both hemispheres 205.3
2090 Male, age 80, both hemispheres 178.5
1984 Male, age 76, both hemispheres 173.9
2301 Female, age 85, both hemispheres 172.6
Dorsal cochlear nucleus
nTPM: 184.9
2802 Male, age 74, right hemisphere 206.8
2187 Female, age 91, both hemispheres 188.0
2378 Male, age 80, both hemispheres 184.9
2058 Male, age 76, both hemispheres 172.6
2370 Male, age 61, both hemispheres 172.5
Dorsal tegmental nucleus
nTPM: 181.9
2083 Male, age 80, both hemispheres 199.3
2326 Male, age 74, both hemispheres 198.4
1936 Male, age 76, left hemisphere 170.7
2358 Male, age 61, both hemispheres 159.3
Dorsolateral tegmental area
nTPM: 185.2
2751 Female, age 85, both hemispheres 206.1
2654 Male, age 80, both hemispheres 200.1
2360 Male, age 74, both hemispheres 180.4
2141 Male, age 76, both hemispheres 170.0
2337 Male, age 61, both hemispheres 169.5
Kolliker-Fuse nucleus
nTPM: 191.4
2793 Female, age 91, left hemisphere 214.3
2163 Male, age 80, both hemispheres 188.1
2315 Male, age 76, right hemisphere 171.7
Lateral lemniscal nuclei
nTPM: 196.0
2320 Female, age 91, left hemisphere 202.2
2453 Male, age 74, right hemisphere 200.1
2036 Male, age 80, both hemispheres 194.6
2746 Female, age 85, left hemisphere 192.5
2169 Male, age 76, both hemispheres 190.6
Lateral parabrachial nucleus
nTPM: 193.3
2792 Male, age 76, both hemispheres 205.4
2013 Male, age 80, both hemispheres 195.3
2790 Male, age 61, both hemispheres 189.5
2139 Female, age 85, right hemisphere 183.0
Lateral vestibular nucleus
nTPM: 175.9
2184 Male, age 76, both hemispheres 179.9
2311 Male, age 80, both hemispheres 171.9
Locus coeruleus
nTPM: 212.4
2014 Male, age 55, unknown 224.9
1980 Male, age 76, both hemispheres 217.5
2123 Female, age 91, both hemispheres 216.2
2788 Male, age 74, unknown 215.6
2720 Male, age 74, both hemispheres 214.7
2317 Female, age 72, unknown 201.4
2162 Male, age 80, both hemispheres 196.3
Medial olivary nucleus
nTPM: 190.2
1943 Male, age 61, both hemispheres 202.8
2138 Female, age 91, both hemispheres 188.5
1962 Male, age 76, both hemispheres 185.9
2851 Male, age 80, both hemispheres 183.4
Medial parabrachial nucleus
nTPM: 188.9
2463 Female, age 85, right hemisphere 199.4
2170 Female, age 91, both hemispheres 197.3
2854 Male, age 80, both hemispheres 190.8
2156 Male, age 61, both hemispheres 179.3
2786 Male, age 76, both hemispheres 177.7
Medial periolivary nuclei
nTPM: 193.7
2791 Male, age 74, right hemisphere 206.8
2063 Male, age 76, both hemispheres 195.4
2081 Male, age 80, both hemispheres 193.0
2458 Female, age 91, both hemispheres 187.2
2171 Female, age 85, both hemispheres 186.1
Motor facial nucleus
nTPM: 190.7
2365 Male, age 74, right hemisphere 208.9
2062 Male, age 76, both hemispheres 192.9
2697 Female, age 85, both hemispheres 190.7
2126 Male, age 61, both hemispheres 190.0
2795 Female, age 91, both hemispheres 184.6
2327 Male, age 80, both hemispheres 176.9
Motor trigeminal nucleus
nTPM: 180.7
2560 Male, age 74, both hemispheres 208.2
2079 Male, age 80, both hemispheres 180.3
2321 Female, age 91, both hemispheres 173.8
2309 Male, age 76, both hemispheres 172.6
2335 Male, age 61, both hemispheres 168.7
Nuclei of the trapezoid body
nTPM: 194.1
2159 Male, age 61, both hemispheres 212.6
1983 Male, age 76, both hemispheres 194.3
2166 Male, age 80, both hemispheres 190.6
2368 Female, age 91, both hemispheres 187.6
2735 Female, age 85, both hemispheres 185.2
Paramedian reticular nucleus
nTPM: 201.9
2050 Female, age 85, both hemispheres 209.8
2313 Male, age 61, both hemispheres 201.3
2057 Male, age 80, both hemispheres 201.1
2052 Male, age 76, both hemispheres 195.5
Pontine nuclei
nTPM: 212.0
2454 Male, age 74, left hemisphere 250.8
2727 Male, age 61, right hemisphere 220.9
2109 Female, age 72, unknown 218.4
1863 Male, age 55, unknown 212.4
2319 Female, age 91, both hemispheres 208.0
2787 Female, age 85, both hemispheres 205.5
1968 Male, age 76, left hemisphere 196.9
2115 Male, age 80, left hemisphere 182.9
Pontine raphe nucleus
nTPM: 195.5
2122 Female, age 85, midline 196.1
2853 Male, age 76, midline 194.8
Posteroventral cochlear nucleus
nTPM: 192.8
2341 Male, age 80, both hemispheres 204.6
2135 Female, age 91, both hemispheres 204.4
2752 Female, age 85, both hemispheres 191.2
2070 Male, age 76, both hemispheres 187.9
2371 Male, age 61, both hemispheres 175.7
Principal sensory trigeminal nucleus
nTPM: 187.3
2367 Female, age 91, left hemisphere 198.0
2158 Male, age 61, both hemispheres 193.4
2008 Male, age 80, left hemisphere 186.8
2324 Male, age 76, both hemispheres 171.1
Reticular pontine nucleus, caudal
nTPM: 201.7
2457 Female, age 91, both hemispheres 216.5
2559 Male, age 74, both hemispheres 210.8
2092 Male, age 76, both hemispheres 194.9
2332 Male, age 80, right hemisphere 184.5
Reticular pontine nucleus, oral
nTPM: 208.0
2361 Male, age 74, both hemispheres 231.7
2012 Female, age 85, both hemispheres 208.3
2366 Female, age 91, both hemispheres 206.8
1939 Male, age 80, both hemispheres 205.3
2167 Male, age 76, both hemispheres 187.8
Reticulotegmental nucleus
nTPM: 188.2
2452 Male, age 74, both hemispheres 199.3
2322 Female, age 91, both hemispheres 193.6
2333 Male, age 80, both hemispheres 186.0
2325 Male, age 76, both hemispheres 173.7
Spinal trigeminal nucleus, oral
nTPM: 186.0
2737 Female, age 85, both hemispheres 190.6
2164 Male, age 80, both hemispheres 186.9
1978 Male, age 76, both hemispheres 180.7
Subcoeruleus area
nTPM: 191.7
2369 Female, age 85, left hemisphere 216.7
1958 Male, age 80, both hemispheres 195.2
2323 Female, age 91, left hemisphere 188.4
2451 Male, age 74, both hemispheres 186.0
2089 Male, age 76, left hemisphere 172.3
Superior olive
nTPM: 198.9
2364 Male, age 74, right hemisphere 212.4
2020 Male, age 76, both hemispheres 206.6
1875 Female, age 85, both hemispheres 203.0
2329 Male, age 80, right hemisphere 187.0
2561 Female, age 91, both hemispheres 185.6
Superior vestibular nucleus
nTPM: 184.3
2383 Male, age 74, both hemispheres 195.3
2015 Male, age 80, both hemispheres 187.1
2061 Male, age 76, both hemispheres 170.4
Ventral periolivary nuclei
nTPM: 186.1
2023 Male, age 76, both hemispheres 212.4
2165 Male, age 80, both hemispheres 191.1
2130 Female, age 85, both hemispheres 172.5
2794 Female, age 91, left hemisphere 168.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 195.6
2449 Male, age 74, both hemispheres 203.5
2840 Female, age 85, both hemispheres 202.9
2456 Female, age 91, both hemispheres 197.1
1959 Male, age 76, both hemispheres 195.8
2161 Male, age 80, both hemispheres 187.3
2359 Male, age 61, both hemispheres 187.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 350.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 283.8
FF:10165-103B3 76 years, female 284.4
FF:10182-103D2 60 years, female 283.2
Pons
Scaled Tags Per Million: 350.9
FF:10033-101E6 18-54 years, mixed 350.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 384.6
Pig sample Sample description nTPM
Pons
nTPM: 384.6
Samples: 4

Max nTPM: 432.8
Min nTPM: 304.0
Sample A Female 391.4
Sample B Female 304.0
Sample C Male 410.2
Sample D Male 432.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.4
1130 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 5.7
1131 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 5.6
73931419 Antisense, RP_051214_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0
70566163 Antisense, RP_050628_02_D11, Mouse strain C57BL/6J (56 days, male) 0.0
1132 Sense, RPS_Baylor_37069, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.