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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:74.5 nTPM
GTEx:143.7 nTPM
FANTOM5:97.8 Scaled Tags Per Million
Pig:45.4 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 74.5
Sample id Sample description nTPM
Putamen
nTPM: 74.5
2489 Female, age 72, unknown 79.0
1838 Male, age 80, right hemisphere 77.9
2466 Female, age 79, unknown 76.9
2647 Male, age 75, left hemisphere 75.0
1937 Female, age 91, right hemisphere 73.0
1829 Male, age 74, unknown 72.1
2482 Female, age 94, left hemisphere 67.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 143.7
Samples: 205

Max nTPM: 287.4
Min nTPM: 53.1
Std nTPM: 47.2
Median nTPM: 141.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 287.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 281.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 266.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 256.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 255.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 246.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 244.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 238.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 235.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 234.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 227.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 226.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 225.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 223.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 223.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 214.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 213.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 211.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 204.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 204.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 203.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 202.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 202.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 200.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 199.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 197.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 196.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 195.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 194.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 194.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 192.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 191.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 191.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 190.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 189.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 188.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 187.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 187.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 186.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 185.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 184.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 184.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 183.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 182.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 182.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 181.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 180.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 179.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 179.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 177.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 176.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 174.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 173.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 172.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 171.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 171.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 169.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 169.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 168.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 167.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 167.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 166.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 165.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 165.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 163.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 161.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 161.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 161.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 160.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 160.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 159.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 159.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 158.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 158.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 156.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 154.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 154.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 154.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 153.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 151.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 151.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 151.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 151.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 150.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 150.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 150.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 150.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 148.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 147.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 146.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 145.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 145.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 145.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 145.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 144.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 144.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 144.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 143.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 142.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 142.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 142.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 141.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 141.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 141.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 140.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 140.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 139.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 137.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 136.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 135.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 135.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 133.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 133.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 133.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 133.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 132.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 132.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 131.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 130.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 130.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 129.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 129.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 129.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 129.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 127.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 127.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 127.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 127.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 127.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 126.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 125.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 122.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 121.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 120.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 120.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 118.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 115.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 114.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 114.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 113.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 113.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 113.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 112.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 112.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 112.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 112.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 111.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 110.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 110.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 109.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 109.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 109.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 108.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 108.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 108.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 107.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 106.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 105.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 105.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 104.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 104.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 101.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 101.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 101.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 100.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 99.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 99.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 98.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 96.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 96.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 96.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 96.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 94.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 93.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 91.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 91.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 90.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 89.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 89.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 87.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 87.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 87.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 86.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 86.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 86.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 85.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 84.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 81.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 80.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 80.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 79.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 78.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 77.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 76.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 75.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 74.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 72.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 70.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 70.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 68.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 63.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 63.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 62.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 57.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 53.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 97.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 97.8
FF:10176-103C5 60 years, female 97.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.4
Pig sample Sample description nTPM
Putamen
nTPM: 45.4
Samples: 4

Max nTPM: 72.0
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 47.9
Sample C Male 72.0
Sample D Male 45.2

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