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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:852.0 nTPM
HPA:852.0 nTPM
GTEx:1360.6 nTPM
FANTOM5:379.7 Scaled Tags Per Million
Mouse:2572.1 nTPM
Allen mouse:4.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 852.0
Sample id Sample description nTPM
Amygdala
nTPM: 838.6
2517 Female, age 94, left hemisphere 857.7
2695 Female, age 67, right hemisphere 853.0
2514 Male, age 75, right hemisphere 847.7
1987 Female, age 91, left hemisphere 836.9
2814 Male, age 76, right hemisphere 797.8
Basal amygdala
nTPM: 815.1
2827 Female, age 67, right hemisphere 872.2
2110 Male, age 80, left hemisphere 830.8
2609 Male, age 75, right hemisphere 808.3
2685 Female, age 94, left hemisphere 801.1
1955 Male, age 76, both hemispheres 792.7
2243 Female, age 91, right hemisphere 785.6
Central amygdala
nTPM: 833.0
2826 Female, age 94, left hemisphere 884.0
2515 Male, age 75, right hemisphere 866.1
2239 Male, age 80, left hemisphere 822.8
2701 Female, age 91, right hemisphere 796.5
1905 Male, age 76, both hemispheres 795.8
Corticomedial amygdala
nTPM: 816.4
2535 Female, age 67, right hemisphere 852.3
2429 Female, age 94, left hemisphere 833.9
2428 Male, age 75, right hemisphere 819.3
2242 Female, age 91, right hemisphere 811.5
2829 Male, age 80, left hemisphere 809.7
2240 Male, age 76, both hemispheres 771.9
Lateral amygdala
nTPM: 852.0
2830 Female, age 67, right hemisphere 907.5
2516 Male, age 75, right hemisphere 882.4
2534 Female, age 94, left hemisphere 856.4
2256 Male, age 80, left hemisphere 845.1
2255 Female, age 91, right hemisphere 833.7
1883 Male, age 76, both hemispheres 786.7
Stria terminalis, bed nucleus
nTPM: 790.9
2201 Male, age 74, unknown 798.2
1974 Female, age 91, both hemispheres 795.8
2486 Female, age 94, both hemispheres 778.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1360.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1360.6
Samples: 152

Max nTPM: 3487.6
Min nTPM: 492.9
Std nTPM: 546.3
Median nTPM: 1253.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3487.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3017.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2967.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2840.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2623.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2609.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2470.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2433.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2367.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2344.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2329.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2245.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2218.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2196.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2193.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2190.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2183.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2152.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2087.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2027.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1966.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1935.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1924.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1903.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1853.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1849.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1785.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1778.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1759.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1759.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1727.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1687.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1674.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1673.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1670.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1643.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1611.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1605.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1584.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1563.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1556.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1541.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1526.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1526.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1510.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1509.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1502.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1477.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1473.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1469.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1454.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1447.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1445.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1432.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1417.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1413.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1411.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1411.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1406.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1403.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1398.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1391.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1381.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1374.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1373.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1356.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1350.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1329.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1295.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1294.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1284.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1282.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1273.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1272.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1265.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1256.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1250.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1248.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1222.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1209.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1209.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1205.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1204.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1187.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1186.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1183.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1127.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1119.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1110.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1109.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1103.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1103.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1102.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1099.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1098.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1085.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1085.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1084.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1082.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1071.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1061.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1058.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1053.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1041.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1026.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1025.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1025.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1021.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1018.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1015.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1013.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 997.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 992.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 979.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 974.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 973.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 965.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 962.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 959.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 953.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 943.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 937.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 934.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 934.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 932.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 921.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 919.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 891.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 884.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 883.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 881.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 858.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 854.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 832.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 830.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 824.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 797.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 796.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 781.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 744.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 704.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 683.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 679.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 663.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 652.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 620.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 601.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 586.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 581.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 562.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 532.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 492.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 379.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 379.7
FF:10151-102I7 76 years, female 379.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2572.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 2572.1
Samples: 4

Max nTPM: 2914.7
Min nTPM: 2410.9
Sample A Male 2410.9
Sample B Male 2543.8
Sample C Female 2914.7
Sample D Female 2419.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 4.7

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