MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:857.5 nTPM
HPA:857.5 nTPM
GTEx:1299.5 nTPM
FANTOM5:405.5 Scaled Tags Per Million
Mouse:788.6 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 857.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 820.4
2411 Female, age 72, unknown 841.9
2586 Male, age 75, left hemisphere 838.0
2219 Male, age 76, both hemispheres 828.5
2828 Female, age 72, unknown 828.3
1870 Female, age 42, unknown 827.1
2019 Male, age 18, unknown 822.2
2666 Male, age 74, left hemisphere 817.5
1830 Male, age 51, unknown 806.7
1833 Male, age 53, unknown 802.0
1827 Male, age 72, unknown 791.7
Dorsal raphe nucleus
nTPM: 817.4
2750 Male, age 76, both hemispheres 836.3
2016 Female, age 72, unknown 820.6
2298 Female, age 72, unknown 815.0
1828 Male, age 53, unknown 811.2
2047 Male, age 72, unknown 803.8
Inferior colliculus
nTPM: 809.7
1890 Male, age 53, unknown 827.9
1848 Female, age 42, unknown 806.1
2097 Female, age 72, unknown 802.8
2849 Male, age 72, unknown 801.9
Median raphe nucleus
nTPM: 830.7
2220 Male, age 76, midline 830.7
Pedunculopontine tegmental nucleus
nTPM: 831.9
2338 Male, age 61, both hemispheres 855.0
2334 Male, age 80, both hemispheres 851.4
1921 Female, age 85, both hemispheres 789.3
Periaquaductal grey, anterior
nTPM: 857.5
2502 Female, age 75, unknown 904.9
1795 Male, age 51, unknown 856.6
1947 Male, age 18, unknown 811.2
Periaquaductal grey, dorsal
nTPM: 810.4
2464 Female, age 72, unknown 831.3
1840 Male, age 53, unknown 827.4
2850 Male, age 76, both hemispheres 797.0
1831 Male, age 72, unknown 786.1
Periaquaductal grey, lateral
nTPM: 814.8
2053 Male, age 18, unknown 816.0
2140 Male, age 76, both hemispheres 814.5
2272 Male, age 74, both hemispheres 813.9
Pretectal area
nTPM: 802.6
2007 Male, age 72, unknown 814.5
2316 Male, age 76, right hemisphere 813.6
2273 Male, age 74, both hemispheres 813.4
2825 Male, age 18, unknown 806.3
1815 Male, age 53, unknown 802.9
2224 Female, age 72, unknown 802.5
2407 Male, age 75, both hemispheres 802.2
1817 Female, age 42, unknown 798.9
1816 Male, age 51, unknown 796.7
1944 Female, age 72, unknown 791.4
2667 Female, age 75, unknown 785.8
Red nucleus
nTPM: 838.5
2503 Female, age 72, unknown 911.3
2227 Male, age 72, unknown 878.1
2769 Male, age 72, unknown 861.4
1865 Male, age 51, unknown 853.4
1904 Male, age 53, unknown 841.9
2588 Male, age 74, left hemisphere 832.9
2725 Female, age 75, unknown 829.2
2584 Male, age 75, left hemisphere 826.6
2785 Male, age 18, unknown 824.8
1954 Female, age 42, unknown 807.4
1821 Female, age 72, unknown 803.8
2823 Male, age 76, right hemisphere 791.4
Substantia nigra
nTPM: 851.9
2409 Female, age 72, unknown 907.0
1851 Male, age 51, unknown 902.5
2699 Male, age 18, unknown 894.7
1916 Female, age 42, unknown 873.7
2590 Female, age 75, unknown 842.2
2665 Male, age 74, both hemispheres 836.1
1941 Male, age 53, unknown 821.6
2241 Male, age 72, unknown 818.9
2583 Male, age 75, right hemisphere 813.1
1889 Female, age 72, unknown 809.1
Superior colliculus
nTPM: 821.8
1995 Male, age 72, unknown 860.9
1913 Female, age 42, unknown 856.2
2587 Male, age 74, left hemisphere 852.1
1796 Male, age 53, unknown 833.1
2261 Male, age 18, unknown 825.6
2087 Female, age 72, unknown 816.0
2668 Female, age 75, unknown 812.8
2664 Male, age 75, both hemispheres 802.0
1839 Male, age 51, unknown 801.1
1895 Male, age 76, right hemisphere 758.5
Ventral tegmental area
nTPM: 853.5
2223 Female, age 72, unknown 880.9
1915 Female, age 42, unknown 880.3
2410 Female, age 72, unknown 867.9
2021 Male, age 53, unknown 842.9
1942 Male, age 51, unknown 830.3
2218 Male, age 76, both hemispheres 818.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1299.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1299.5
Samples: 139

Max nTPM: 5218.4
Min nTPM: 392.5
Std nTPM: 559.2
Median nTPM: 1190.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5218.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2934.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2818.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2741.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2734.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2042.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2004.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1994.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1988.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1925.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1921.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 405.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 405.5
FF:10158-103A5 76 years, female 405.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 788.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 788.6
Samples: 4

Max nTPM: 1053.4
Min nTPM: 615.4
Sample A Male 1053.4
Sample B Male 699.5
Sample C Female 615.4
Sample D Female 786.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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