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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:873.6 nTPM
HPA:873.6 nTPM
FANTOM5:305.1 Scaled Tags Per Million
Mouse:1169.8 nTPM
Allen mouse:2.2 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max nTPM 873.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 823.4
2396 Male, age 61, right hemisphere 866.4
2497 Male, age 66, unknown 805.7
2032 Female, age 42, unknown 798.0
Centromedial thalamic nucleus
nTPM: 821.9
2279 Female, age 85, left hemisphere 870.8
2401 Male, age 76, right hemisphere 773.0
Habenula
nTPM: 787.6
2203 Male, age 61, left hemisphere 793.6
2252 Male, age 62, unknown 791.3
2276 Male, age 66, unknown 790.5
1957 Male, age 80, both hemispheres 774.9
Lateral geniculate body
nTPM: 792.3
2857 Male, age 74, right hemisphere 844.1
2575 Female, age 94, right hemisphere 813.4
2841 Male, age 80, both hemispheres 798.0
2035 Female, age 72, unknown 790.4
2106 Female, age 67, right hemisphere 787.8
1953 Male, age 62, unknown 771.0
2659 Male, age 66, unknown 767.3
2399 Male, age 61, left hemisphere 766.2
Lateral thalamic nuclei
nTPM: 811.8
2577 Male, age 74, both hemispheres 835.4
2661 Female, age 72, unknown 819.7
2573 Female, age 94, left hemisphere 816.1
2765 Female, age 67, both hemispheres 814.7
1903 Male, age 76, left hemisphere 773.2
Medial dorsal thalamic nucleus
nTPM: 809.9
2572 Female, age 94, right hemisphere 863.8
1810 Male, age 48, unknown 832.7
1971 Male, age 61, right hemisphere 831.9
2576 Male, age 74, both hemispheres 824.9
1930 Female, age 42, unknown 812.6
2492 Male, age 75, right hemisphere 811.9
2498 Male, age 66, unknown 809.5
2402 Female, age 67, both hemispheres 799.1
1859 Male, age 76, both hemispheres 792.4
2660 Female, age 72, unknown 792.1
2283 Male, age 80, right hemisphere 792.0
2039 Female, age 72, unknown 791.1
2026 Male, age 62, unknown 775.0
Medial geniculate body
nTPM: 816.7
2571 Male, age 75, right hemisphere 863.0
2207 Male, age 80, right hemisphere 836.8
2217 Female, age 72, unknown 827.3
2657 Male, age 74, right hemisphere 806.0
2049 Male, age 76, both hemispheres 804.5
2650 Female, age 94, left hemisphere 799.2
1811 Female, age 42, unknown 780.1
Nucleus reuniens
nTPM: 845.8
2210 Female, age 85, left hemisphere 878.2
2205 Male, age 80, left hemisphere 843.1
2212 Female, age 67, left hemisphere 815.9
Nucleus rhomboideus
nTPM: 834.4
2280 Female, age 85, left hemisphere 851.6
2213 Female, age 67, left hemisphere 832.7
2206 Male, age 80, both hemispheres 818.8
Posterior thalamic nucleus
nTPM: 873.6
2649 Female, age 94, both hemispheres 1003.0
2655 Male, age 74, right hemisphere 856.5
2266 Male, age 76, right hemisphere 823.3
2495 Female, age 67, right hemisphere 811.6
Pulvinar
nTPM: 799.0
2496 Female, age 67, right hemisphere 839.7
2499 Male, age 66, unknown 820.7
2214 Male, age 76, right hemisphere 803.0
2582 Female, age 72, unknown 802.7
1929 Male, age 48, unknown 799.2
1972 Male, age 62, unknown 791.4
2724 Male, age 74, right hemisphere 790.3
1932 Male, age 80, right hemisphere 788.0
1899 Female, age 42, unknown 781.3
2398 Male, age 61, left hemisphere 773.4
Subthalamic nucleus
nTPM: 817.3
2056 Female, age 72, unknown 842.4
2124 Male, age 62, unknown 836.1
2275 Male, age 66, unknown 824.5
2779 Female, age 42, unknown 822.5
2658 Male, age 74, both hemispheres 813.9
2216 Male, age 48, unknown 807.0
2282 Male, age 61, both hemispheres 806.3
2406 Female, age 72, unknown 785.7
Ventral posterolateral thalamic nucleus
nTPM: 801.7
2578 Male, age 74, both hemispheres 827.2
2197 Male, age 80, both hemispheres 823.0
2740 Male, age 76, right hemisphere 797.4
2397 Male, age 61, right hemisphere 789.8
2581 Female, age 72, unknown 787.8
2570 Male, age 75, right hemisphere 785.2
Ventral posteromedial thalamic nucleus
nTPM: 811.4
2653 Male, age 74, both hemispheres 828.9
2127 Male, age 76, right hemisphere 824.2
2202 Male, age 61, left hemisphere 809.9
2758 Male, age 80, both hemispheres 799.4
2281 Male, age 75, right hemisphere 794.8
Ventral thalamic nuclei
nTPM: 808.8
2291 Female, age 72, unknown 837.5
2204 Male, age 80, both hemispheres 829.7
2652 Male, age 74, left hemisphere 821.5
1912 Female, age 42, unknown 811.6
2285 Male, age 62, unknown 805.7
2580 Male, age 66, unknown 804.5
1860 Male, age 76, both hemispheres 798.3
1845 Male, age 48, unknown 793.6
2858 Female, age 72, unknown 777.1
Ventromedial nucleus
nTPM: 801.8
1982 Female, age 72, unknown 831.2
1822 Female, age 42, unknown 772.4
Zona incerta
nTPM: 802.7
2215 Male, age 66, unknown 815.5
2822 Male, age 74, right hemisphere 813.1
2403 Male, age 62, unknown 809.5
2208 Male, age 80, right hemisphere 809.3
2663 Female, age 72, unknown 766.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 305.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 305.1
FF:10154-103A1 76 years, female 305.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1169.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 1169.8
Samples: 4

Max nTPM: 1801.4
Min nTPM: 769.6
Sample A Male 1801.4
Sample B Male 832.9
Sample C Female 1275.3
Sample D Female 769.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.2
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 2.2

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