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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1538.1 nTPM
HPA:1538.1 nTPM
GTEx:1864.7 nTPM
FANTOM5:1021.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1538.1
Sample id Sample description nTPM
Amygdala
nTPM: 1538.1
2695 Female, age 67, right hemisphere 1653.1
2514 Male, age 75, right hemisphere 1541.2
2814 Male, age 76, right hemisphere 1521.3
2517 Female, age 94, left hemisphere 1493.4
1987 Female, age 91, left hemisphere 1481.5
Basal amygdala
nTPM: 1494.6
2827 Female, age 67, right hemisphere 1552.1
2609 Male, age 75, right hemisphere 1508.5
2685 Female, age 94, left hemisphere 1482.6
2243 Female, age 91, right hemisphere 1477.3
2110 Male, age 80, left hemisphere 1475.2
1955 Male, age 76, both hemispheres 1472.1
Central amygdala
nTPM: 1500.2
2826 Female, age 94, left hemisphere 1595.9
2701 Female, age 91, right hemisphere 1483.8
2239 Male, age 80, left hemisphere 1482.8
2515 Male, age 75, right hemisphere 1472.3
1905 Male, age 76, both hemispheres 1466.1
Corticomedial amygdala
nTPM: 1494.7
2240 Male, age 76, both hemispheres 1525.2
2829 Male, age 80, left hemisphere 1505.5
2242 Female, age 91, right hemisphere 1494.7
2535 Female, age 67, right hemisphere 1491.7
2429 Female, age 94, left hemisphere 1483.1
2428 Male, age 75, right hemisphere 1468.0
Lateral amygdala
nTPM: 1500.2
2830 Female, age 67, right hemisphere 1594.3
2516 Male, age 75, right hemisphere 1539.0
2534 Female, age 94, left hemisphere 1496.6
2256 Male, age 80, left hemisphere 1476.0
1883 Male, age 76, both hemispheres 1461.7
2255 Female, age 91, right hemisphere 1433.8
Stria terminalis, bed nucleus
nTPM: 1455.0
1974 Female, age 91, both hemispheres 1484.0
2201 Male, age 74, unknown 1458.8
2486 Female, age 94, both hemispheres 1422.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1864.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1864.7
Samples: 152

Max nTPM: 5781.6
Min nTPM: 863.5
Std nTPM: 761.2
Median nTPM: 1705.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5781.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5231.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5206.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4537.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4104.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3369.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3252.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3003.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2942.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2926.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2818.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2697.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2676.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2609.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2591.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2587.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2578.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2552.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2525.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2496.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2446.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2442.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2399.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2377.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2371.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2338.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2333.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2290.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2253.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2248.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2246.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2212.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2208.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2203.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2199.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2152.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2114.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2059.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2050.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2037.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2019.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2019.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2001.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1990.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1989.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1979.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1979.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1969.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1966.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1951.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1950.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1917.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1916.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1910.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1909.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1867.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1860.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1859.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1841.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1811.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1806.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1797.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1794.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1786.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1778.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1777.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1768.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1766.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1762.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1762.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1745.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1745.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1736.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1719.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1718.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1713.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1698.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1688.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1685.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1663.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1653.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1653.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1652.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1643.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1641.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1640.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1636.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1632.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1630.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1609.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1603.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1600.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1584.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1571.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1562.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1546.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1543.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1529.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1524.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1518.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1502.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1483.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1478.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1457.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1456.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1454.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1444.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1440.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1438.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1416.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1412.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1410.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1403.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1399.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1395.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1392.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1391.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1389.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1387.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1384.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1345.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1342.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1331.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1330.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1322.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1309.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1308.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1288.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1277.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1274.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1273.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1273.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1259.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1254.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1253.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1250.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1244.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1221.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1220.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1172.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1156.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1145.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1131.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1064.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1058.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1045.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1024.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 999.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 968.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 925.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 882.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 863.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1021.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1021.2
FF:10151-102I7 76 years, female 1021.2

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