MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1569.3 nTPM
HPA:1569.3 nTPM
GTEx:1613.1 nTPM
FANTOM5:1155.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1569.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1486.3
2666 Male, age 74, left hemisphere 1537.3
1870 Female, age 42, unknown 1517.0
1833 Male, age 53, unknown 1511.3
2219 Male, age 76, both hemispheres 1488.4
1827 Male, age 72, unknown 1486.6
1830 Male, age 51, unknown 1485.0
2411 Female, age 72, unknown 1479.6
2828 Female, age 72, unknown 1476.9
2586 Male, age 75, left hemisphere 1445.2
2019 Male, age 18, unknown 1435.5
Dorsal raphe nucleus
nTPM: 1475.3
2750 Male, age 76, both hemispheres 1494.6
1828 Male, age 53, unknown 1487.5
2016 Female, age 72, unknown 1486.3
2298 Female, age 72, unknown 1458.7
2047 Male, age 72, unknown 1449.5
Inferior colliculus
nTPM: 1489.0
2849 Male, age 72, unknown 1525.9
1890 Male, age 53, unknown 1491.9
1848 Female, age 42, unknown 1481.5
2097 Female, age 72, unknown 1456.7
Median raphe nucleus
nTPM: 1509.4
2220 Male, age 76, midline 1509.4
Pedunculopontine tegmental nucleus
nTPM: 1569.3
2338 Male, age 61, both hemispheres 1676.8
2334 Male, age 80, both hemispheres 1559.6
1921 Female, age 85, both hemispheres 1471.5
Periaquaductal grey, anterior
nTPM: 1457.1
2502 Female, age 75, unknown 1462.9
1947 Male, age 18, unknown 1458.6
1795 Male, age 51, unknown 1449.7
Periaquaductal grey, dorsal
nTPM: 1497.8
2850 Male, age 76, both hemispheres 1541.9
1831 Male, age 72, unknown 1509.1
1840 Male, age 53, unknown 1482.0
2464 Female, age 72, unknown 1457.9
Periaquaductal grey, lateral
nTPM: 1475.3
2053 Male, age 18, unknown 1494.6
2140 Male, age 76, both hemispheres 1484.8
2272 Male, age 74, both hemispheres 1446.6
Pretectal area
nTPM: 1474.0
2825 Male, age 18, unknown 1502.1
1817 Female, age 42, unknown 1500.1
1815 Male, age 53, unknown 1495.9
2224 Female, age 72, unknown 1479.5
1944 Female, age 72, unknown 1475.1
2667 Female, age 75, unknown 1475.1
2316 Male, age 76, right hemisphere 1466.9
1816 Male, age 51, unknown 1463.6
2007 Male, age 72, unknown 1458.8
2407 Male, age 75, both hemispheres 1456.9
2273 Male, age 74, both hemispheres 1439.6
Red nucleus
nTPM: 1506.3
2503 Female, age 72, unknown 1575.8
2725 Female, age 75, unknown 1544.2
1821 Female, age 72, unknown 1536.9
1865 Male, age 51, unknown 1535.4
1954 Female, age 42, unknown 1500.2
1904 Male, age 53, unknown 1493.4
2823 Male, age 76, right hemisphere 1489.3
2769 Male, age 72, unknown 1485.4
2584 Male, age 75, left hemisphere 1484.7
2227 Male, age 72, unknown 1482.6
2588 Male, age 74, left hemisphere 1474.1
2785 Male, age 18, unknown 1473.2
Substantia nigra
nTPM: 1515.8
2699 Male, age 18, unknown 1627.6
2665 Male, age 74, both hemispheres 1539.5
2241 Male, age 72, unknown 1533.6
1851 Male, age 51, unknown 1528.1
2409 Female, age 72, unknown 1526.8
1916 Female, age 42, unknown 1513.2
1889 Female, age 72, unknown 1503.7
1941 Male, age 53, unknown 1478.5
2590 Female, age 75, unknown 1465.4
2583 Male, age 75, right hemisphere 1441.2
Superior colliculus
nTPM: 1485.2
2587 Male, age 74, left hemisphere 1548.3
1913 Female, age 42, unknown 1530.2
1995 Male, age 72, unknown 1496.8
1895 Male, age 76, right hemisphere 1485.8
2668 Female, age 75, unknown 1485.2
1839 Male, age 51, unknown 1484.4
1796 Male, age 53, unknown 1481.0
2087 Female, age 72, unknown 1459.5
2664 Male, age 75, both hemispheres 1440.9
2261 Male, age 18, unknown 1439.5
Ventral tegmental area
nTPM: 1510.7
2223 Female, age 72, unknown 1549.1
1915 Female, age 42, unknown 1534.8
2218 Male, age 76, both hemispheres 1517.7
2021 Male, age 53, unknown 1498.7
1942 Male, age 51, unknown 1482.9
2410 Female, age 72, unknown 1481.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1613.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1613.1
Samples: 139

Max nTPM: 5644.5
Min nTPM: 572.9
Std nTPM: 635.5
Median nTPM: 1520.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5644.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3813.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3459.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2914.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2866.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2699.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2569.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2561.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2503.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2499.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2451.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1155.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1155.2
FF:10158-103A5 76 years, female 1155.2

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The Human Protein Atlas

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