BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:48.3 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:68.0 nTPM
Allen mouse:8.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044615
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.1
2288 Male, age 75, left hemisphere 35.3
2846 Female, age 79, unknown 34.9
2290 Female, age 72, unknown 34.8
2481 Female, age 94, left hemisphere 34.5
1857 Female, age 85, left hemisphere 33.8
2289 Male, age 61, right hemisphere 33.8
1854 Male, age 80, left hemisphere 33.3
1781 Male, age 74, unknown 32.3
Claustrum
nTPM: 31.2
2645 Female, age 72, unknown 32.8
2284 Female, age 91, both hemispheres 32.3
2568 Male, age 61, both hemispheres 31.9
1956 Male, age 74, unknown 31.2
2491 Male, age 75, both hemispheres 31.2
2198 Male, age 80, both hemispheres 30.7
2196 Female, age 79, unknown 30.2
2292 Female, age 85, both hemispheres 30.1
2392 Female, age 94, both hemispheres 30.0
Globus pallidus, externus
nTPM: 33.5
1996 Male, age 80, right hemisphere 35.2
2772 Female, age 79, unknown 34.3
2395 Male, age 75, both hemispheres 33.3
2646 Male, age 61, right hemisphere 32.7
2567 Female, age 72, unknown 31.8
Globus pallidus, internus
nTPM: 33.9
2287 Male, age 75, right hemisphere 37.8
1818 Male, age 74, unknown 34.7
2483 Female, age 94, right hemisphere 34.4
2037 Male, age 80, right hemisphere 34.2
2778 Female, age 91, both hemispheres 33.4
2111 Female, age 85, right hemisphere 31.7
2566 Female, age 72, unknown 31.0
Nucleus accumbens
nTPM: 33.2
2286 Male, age 75, left hemisphere 35.5
1783 Male, age 74, unknown 34.9
1856 Female, age 91, right hemisphere 34.7
1806 Female, age 85, left hemisphere 33.0
2824 Male, age 61, right hemisphere 32.3
2391 Female, age 94, left hemisphere 32.0
2698 Female, age 72, unknown 31.9
2732 Male, age 80, right hemisphere 30.9
Nucleus basalis of Meynert
nTPM: 32.8
2569 Male, age 61, both hemispheres 33.8
2393 Male, age 80, right hemisphere 33.5
2484 Female, age 94, left hemisphere 32.0
2821 Male, age 75, both hemispheres 31.7
Nucleus of the diagonal band
nTPM: 31.8
1979 Male, age 74, unknown 32.5
2775 Male, age 80, right hemisphere 32.3
1812 Female, age 91, both hemispheres 32.2
2195 Female, age 85, both hemispheres 31.4
2029 Male, age 61, right hemisphere 30.4
Olfactory tubercle
nTPM: 31.6
1846 Male, age 80, right hemisphere 32.8
2856 Male, age 75, right hemisphere 32.3
1998 Female, age 91, both hemispheres 31.7
2487 Female, age 94, left hemisphere 29.6
Putamen
nTPM: 34.3
1838 Male, age 80, right hemisphere 35.3
2466 Female, age 79, unknown 35.2
2647 Male, age 75, left hemisphere 34.5
2489 Female, age 72, unknown 34.4
1937 Female, age 91, right hemisphere 33.6
2482 Female, age 94, left hemisphere 33.6
1829 Male, age 74, unknown 33.2
Septal nuclei
nTPM: 31.5
1960 Male, age 74, unknown 33.2
2031 Female, age 72, unknown 31.7
2629 Female, age 94, right hemisphere 31.7
2009 Female, age 91, both hemispheres 31.4
2199 Male, age 80, right hemisphere 31.0
2059 Female, age 85, both hemispheres 30.9
2394 Male, age 61, left hemisphere 30.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 84.5
Min nTPM: 26.2
Std nTPM: 8.9
Median nTPM: 43.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 84.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 82.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 72.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 72.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 67.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 63.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 61.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.6
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.4
Samples: 246

Max nTPM: 75.6
Min nTPM: 26.1
Std nTPM: 7.9
Median nTPM: 44.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 75.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 70.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 70.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 67.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 64.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 62.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 61.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 61.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 60.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 60.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 60.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 48.3
Samples: 205

Max nTPM: 77.3
Min nTPM: 30.1
Std nTPM: 8.3
Median nTPM: 47.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 77.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 75.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 71.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 68.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 67.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 66.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 65.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 64.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 64.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 63.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 63.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.2
FF:10164-103B2 76 years, female 69.2
Globus pallidus
Scaled Tags Per Million: 55.7
FF:10161-103A8 76 years, female 60.8
FF:10175-103C4 60 years, female 50.5
Nucleus accumbens
Scaled Tags Per Million: 53.9
FF:10037-101F1 23-56 years, mixed 53.9
Putamen
Scaled Tags Per Million: 61.1
FF:10176-103C5 60 years, female 61.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.4
Pig sample Sample description nTPM
Caudate
nTPM: 20.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 21.5
Sample C Male 24.2
Sample D Male 18.1
Putamen
nTPM: 24.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 17.8
Sample A Female 24.5
Sample B Female 17.8
Sample C Male 29.8
Sample D Male 25.6
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.4
Sample A Female 20.4
Sample B Female 18.4
Sample C Male 21.0
Sample D Male 24.4
Ventral pallidum
nTPM: 21.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 22.3
Sample C Male 23.5
Sample D Male 21.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.6
Samples: 4

Max nTPM: 69.5
Min nTPM: 62.9
Sample A Male 65.7
Sample B Male 68.3
Sample C Female 69.5
Sample D Female 62.9
Septum
nTPM: 68.1
Samples: 4

Max nTPM: 68.7
Min nTPM: 67.7
Sample A Male 68.7
Sample B Male 67.7
Sample C Female 67.8
Sample D Female 68.0
Ventral forebrain
nTPM: 63.3
Samples: 4

Max nTPM: 64.5
Min nTPM: 61.7
Sample A Male 63.8
Sample B Male 63.1
Sample C Female 64.5
Sample D Female 61.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.2
67815540 Antisense, RP_040920_01_G10, Mouse strain C57BL/6J (56 days, male) 8.2
Pallidum
Expression energy: 7.1
67815540 Antisense, RP_040920_01_G10, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.