MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:39.6 nTPM
FANTOM5:45.5 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:61.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2586 Male, age 75, left hemisphere 34.0
2219 Male, age 76, both hemispheres 32.9
2666 Male, age 74, left hemisphere 32.8
1827 Male, age 72, unknown 32.7
1870 Female, age 42, unknown 32.6
1833 Male, age 53, unknown 32.3
2828 Female, age 72, unknown 32.2
1830 Male, age 51, unknown 32.1
2019 Male, age 18, unknown 32.0
2411 Female, age 72, unknown 31.8
Dorsal raphe nucleus
nTPM: 31.9
2047 Male, age 72, unknown 33.0
1828 Male, age 53, unknown 32.3
2298 Female, age 72, unknown 32.3
2750 Male, age 76, both hemispheres 31.2
2016 Female, age 72, unknown 30.9
Inferior colliculus
nTPM: 32.5
2097 Female, age 72, unknown 32.7
2849 Male, age 72, unknown 32.7
1848 Female, age 42, unknown 32.4
1890 Male, age 53, unknown 32.4
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Pedunculopontine tegmental nucleus
nTPM: 32.2
2334 Male, age 80, both hemispheres 32.9
1921 Female, age 85, both hemispheres 32.1
2338 Male, age 61, both hemispheres 31.6
Periaquaductal grey, anterior
nTPM: 33.2
1947 Male, age 18, unknown 34.3
2502 Female, age 75, unknown 33.2
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 31.5
1840 Male, age 53, unknown 32.2
2464 Female, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 30.6
Periaquaductal grey, lateral
nTPM: 31.2
2140 Male, age 76, both hemispheres 31.2
2272 Male, age 74, both hemispheres 31.2
2053 Male, age 18, unknown 31.1
Pretectal area
nTPM: 32.2
2007 Male, age 72, unknown 33.5
2667 Female, age 75, unknown 33.2
1816 Male, age 51, unknown 33.1
1944 Female, age 72, unknown 33.0
1817 Female, age 42, unknown 32.9
1815 Male, age 53, unknown 32.3
2224 Female, age 72, unknown 31.6
2316 Male, age 76, right hemisphere 31.3
2825 Male, age 18, unknown 31.3
2273 Male, age 74, both hemispheres 30.9
2407 Male, age 75, both hemispheres 30.8
Red nucleus
nTPM: 33.0
1821 Female, age 72, unknown 34.5
2227 Male, age 72, unknown 34.2
1954 Female, age 42, unknown 34.0
2588 Male, age 74, left hemisphere 33.9
2725 Female, age 75, unknown 33.2
2769 Male, age 72, unknown 33.2
1904 Male, age 53, unknown 32.6
1865 Male, age 51, unknown 32.4
2503 Female, age 72, unknown 32.4
2823 Male, age 76, right hemisphere 32.4
2785 Male, age 18, unknown 32.0
2584 Male, age 75, left hemisphere 31.3
Substantia nigra
nTPM: 32.4
1916 Female, age 42, unknown 35.9
1851 Male, age 51, unknown 34.1
2665 Male, age 74, both hemispheres 33.4
2699 Male, age 18, unknown 33.2
1941 Male, age 53, unknown 33.0
1889 Female, age 72, unknown 32.6
2583 Male, age 75, right hemisphere 31.6
2241 Male, age 72, unknown 30.2
2590 Female, age 75, unknown 29.9
2409 Female, age 72, unknown 29.6
Superior colliculus
nTPM: 32.0
2668 Female, age 75, unknown 33.2
2087 Female, age 72, unknown 33.1
1895 Male, age 76, right hemisphere 32.8
2261 Male, age 18, unknown 32.4
1796 Male, age 53, unknown 31.7
1839 Male, age 51, unknown 31.7
2664 Male, age 75, both hemispheres 31.7
2587 Male, age 74, left hemisphere 31.3
1995 Male, age 72, unknown 31.1
1913 Female, age 42, unknown 30.5
Ventral tegmental area
nTPM: 32.6
2410 Female, age 72, unknown 33.9
1915 Female, age 42, unknown 33.7
2218 Male, age 76, both hemispheres 32.3
1942 Male, age 51, unknown 32.2
2223 Female, age 72, unknown 31.8
2021 Male, age 53, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.6
Samples: 139

Max nTPM: 59.9
Min nTPM: 24.2
Std nTPM: 6.3
Median nTPM: 39.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 58.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 55.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 51.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 50.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 49.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.5
FF:10158-103A5 76 years, female 45.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.5
Pig sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 35.2
Min nTPM: 24.3
Sample A Female 35.2
Sample B Female 25.0
Sample C Male 25.1
Sample D Male 24.3
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 24.2
Min nTPM: 20.7
Sample B Female 20.7
Sample C Male 24.2
Sample D Male 21.2
Substantia nigra
nTPM: 26.0
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.6
Sample A Female 30.7
Sample B Female 20.6
Sample C Male 28.8
Sample D Male 23.9
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 23.0
Sample A Female 31.9
Sample B Female 23.0
Sample C Male 27.1
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 65.8
Min nTPM: 54.8
Sample A Male 64.5
Sample B Male 60.1
Sample C Female 54.8
Sample D Female 65.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
67815540 Antisense, RP_040920_01_G10, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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