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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:704.4 nTPM
HPA:704.4 nTPM
GTEx:599.8 nTPM
FANTOM5:151.0 Scaled Tags Per Million
Pig:166.4 nTPM
Mouse:199.7 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 704.4
Sample id Sample description nTPM
Amygdala
nTPM: 704.4
2695 Female, age 67, right hemisphere 735.6
2814 Male, age 76, right hemisphere 718.5
1987 Female, age 91, left hemisphere 697.7
2514 Male, age 75, right hemisphere 689.3
2517 Female, age 94, left hemisphere 680.8
Basal amygdala
nTPM: 679.8
2609 Male, age 75, right hemisphere 696.3
2110 Male, age 80, left hemisphere 691.1
1955 Male, age 76, both hemispheres 687.6
2827 Female, age 67, right hemisphere 674.5
2243 Female, age 91, right hemisphere 667.2
2685 Female, age 94, left hemisphere 661.9
Central amygdala
nTPM: 692.4
2826 Female, age 94, left hemisphere 723.6
1905 Male, age 76, both hemispheres 714.7
2515 Male, age 75, right hemisphere 705.2
2239 Male, age 80, left hemisphere 666.5
2701 Female, age 91, right hemisphere 651.9
Corticomedial amygdala
nTPM: 666.6
2428 Male, age 75, right hemisphere 689.2
2829 Male, age 80, left hemisphere 677.9
2240 Male, age 76, both hemispheres 668.3
2242 Female, age 91, right hemisphere 656.4
2535 Female, age 67, right hemisphere 656.4
2429 Female, age 94, left hemisphere 651.5
Lateral amygdala
nTPM: 694.2
2516 Male, age 75, right hemisphere 710.3
1883 Male, age 76, both hemispheres 709.9
2534 Female, age 94, left hemisphere 701.9
2830 Female, age 67, right hemisphere 695.1
2256 Male, age 80, left hemisphere 683.0
2255 Female, age 91, right hemisphere 664.7
Stria terminalis, bed nucleus
nTPM: 651.2
1974 Female, age 91, both hemispheres 667.6
2486 Female, age 94, both hemispheres 644.1
2201 Male, age 74, unknown 641.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 599.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 599.8
Samples: 152

Max nTPM: 1474.2
Min nTPM: 221.5
Std nTPM: 208.3
Median nTPM: 561.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1474.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1448.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1329.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1286.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1134.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1124.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1102.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1100.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1059.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 985.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 911.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 897.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 892.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 864.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 842.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 816.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 801.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 801.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 783.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 749.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 747.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 724.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 723.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 723.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 721.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 715.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 714.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 706.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 705.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 694.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 692.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 687.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 681.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 680.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 678.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 671.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 668.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 662.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 662.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 661.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 659.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 659.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 653.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 648.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 639.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 636.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 635.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 623.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 619.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 618.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 617.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 611.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 608.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 607.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 607.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 604.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 603.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 603.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 600.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 593.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 591.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 590.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 588.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 586.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 582.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 579.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 571.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 570.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 568.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 567.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 567.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 567.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 564.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 564.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 564.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 562.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 561.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 559.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 559.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 557.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 551.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 550.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 550.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 550.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 543.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 543.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 539.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 539.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 538.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 533.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 531.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 528.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 528.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 528.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 527.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 527.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 525.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 525.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 522.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 520.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 516.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 516.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 514.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 512.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 509.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 499.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 498.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 496.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 495.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 487.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 486.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 484.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 482.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 479.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 474.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 468.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 466.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 462.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 457.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 455.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 455.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 454.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 453.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 451.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 441.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 440.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 435.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 435.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 435.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 434.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 433.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 428.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 427.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 421.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 419.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 419.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 416.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 413.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 410.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 401.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 384.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 368.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 367.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 343.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 342.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 335.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 328.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 311.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 305.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 240.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 221.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.0
FF:10151-102I7 76 years, female 151.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 166.4
Pig sample Sample description nTPM
Amygdala
nTPM: 166.4
Samples: 4

Max nTPM: 206.7
Min nTPM: 119.8
Sample A Female 206.7
Sample B Female 167.8
Sample C Male 171.2
Sample D Male 119.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 199.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 199.7
Samples: 4

Max nTPM: 229.0
Min nTPM: 171.2
Sample A Male 171.2
Sample B Male 192.5
Sample C Female 229.0
Sample D Female 206.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
69873558 Antisense, RP_050512_01_E06, Mouse strain C57BL/6J (56 days, male) 1.2

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