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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:739.4 nTPM
HPA:739.4 nTPM
GTEx:696.3 nTPM
FANTOM5:198.1 Scaled Tags Per Million
Pig:394.2 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 739.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 716.8
1981 Female, age 72, midline 763.6
2194 Female, age 79, both hemispheres 727.2
2565 Male, age 75, midline 723.7
2816 Male, age 47, midline 697.2
2048 Male, age 55, midline 672.4
Cervical spinal cord, dorsal horn
nTPM: 707.5
2173 Female, age 72, unknown 765.4
2296 Male, age 66, both hemispheres 736.5
2069 Male, age 47, both hemispheres 719.6
1877 Male, age 55, unknown 692.0
2297 Male, age 75, both hemispheres 673.6
2721 Male, age 90, both hemispheres 657.7
Cervical spinal cord, ventral horn
nTPM: 739.4
2098 Female, age 72, unknown 795.5
2809 Male, age 90, both hemispheres 779.2
2480 Male, age 75, both hemispheres 742.9
2295 Male, age 66, both hemispheres 712.0
2068 Male, age 55, unknown 710.7
2820 Female, age 79, both hemispheres 696.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 696.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 696.3
Samples: 159

Max nTPM: 1669.9
Min nTPM: 257.0
Std nTPM: 212.0
Median nTPM: 680.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1669.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1415.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1251.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1226.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1133.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1110.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1104.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1048.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1042.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1019.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 989.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 989.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 988.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 951.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 941.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 940.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 926.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 919.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 918.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 918.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 910.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 903.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 892.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 885.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 885.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 876.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 871.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 859.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 854.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 850.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 850.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 847.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 845.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 842.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 834.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 834.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 833.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 831.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 830.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 828.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 828.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 827.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 819.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 814.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 811.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 810.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 806.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 804.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 788.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 778.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 775.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 770.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 768.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 761.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 761.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 759.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 753.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 739.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 738.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 737.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 737.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 732.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 730.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 729.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 727.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 726.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 723.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 720.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 712.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 711.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 710.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 710.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 705.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 702.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 701.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 698.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 697.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 687.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 680.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 680.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 679.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 676.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 673.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 670.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 670.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 665.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 660.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 655.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 654.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 652.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 650.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 649.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 644.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 640.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 640.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 637.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 621.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 619.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 612.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 611.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 605.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 605.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 599.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 598.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 595.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 583.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 578.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 574.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 562.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 557.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 555.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 554.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 552.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 552.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 547.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 546.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 546.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 545.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 545.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 539.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 538.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 536.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 536.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 536.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 534.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 530.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 529.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 527.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 519.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 516.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 513.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 511.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 506.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 501.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 497.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 497.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 495.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 489.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 481.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 479.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 475.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 474.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 474.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 472.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 470.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 463.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 430.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 424.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 422.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 406.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 405.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 379.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 359.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 344.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 341.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 337.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 319.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 277.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 257.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 198.1
FF:10181-103D1 60 years, female 247.5
FF:10159-103A6 76 years, female 148.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 394.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 381.0
Samples: 4

Max nTPM: 544.3
Min nTPM: 285.2
Sample A Female 285.2
Sample B Female 384.4
Sample C Male 544.3
Sample D Male 310.1
Ventral spinal cord
nTPM: 394.2
Samples: 4

Max nTPM: 429.1
Min nTPM: 325.2
Sample A Female 325.2
Sample B Female 429.1
Sample C Male 424.7
Sample D Male 397.8

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