MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:725.3 nTPM
HPA:725.3 nTPM
GTEx:758.6 nTPM
FANTOM5:239.2 Scaled Tags Per Million
Pig:367.2 nTPM
Mouse:130.5 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 725.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 699.6
2019 Male, age 18, unknown 730.6
2828 Female, age 72, unknown 729.4
2666 Male, age 74, left hemisphere 708.4
2411 Female, age 72, unknown 706.6
1827 Male, age 72, unknown 697.9
1833 Male, age 53, unknown 693.4
1830 Male, age 51, unknown 689.3
1870 Female, age 42, unknown 688.3
2586 Male, age 75, left hemisphere 688.1
2219 Male, age 76, both hemispheres 664.2
Dorsal raphe nucleus
nTPM: 701.9
2298 Female, age 72, unknown 721.5
2750 Male, age 76, both hemispheres 707.3
1828 Male, age 53, unknown 704.8
2016 Female, age 72, unknown 692.0
2047 Male, age 72, unknown 683.8
Inferior colliculus
nTPM: 683.9
2097 Female, age 72, unknown 708.5
1890 Male, age 53, unknown 694.8
1848 Female, age 42, unknown 674.8
2849 Male, age 72, unknown 657.2
Median raphe nucleus
nTPM: 695.1
2220 Male, age 76, midline 695.1
Pedunculopontine tegmental nucleus
nTPM: 700.5
2338 Male, age 61, both hemispheres 716.8
2334 Male, age 80, both hemispheres 700.0
1921 Female, age 85, both hemispheres 684.7
Periaquaductal grey, anterior
nTPM: 684.9
1795 Male, age 51, unknown 689.6
2502 Female, age 75, unknown 686.7
1947 Male, age 18, unknown 678.3
Periaquaductal grey, dorsal
nTPM: 676.2
1831 Male, age 72, unknown 690.3
2464 Female, age 72, unknown 679.9
1840 Male, age 53, unknown 671.8
2850 Male, age 76, both hemispheres 662.7
Periaquaductal grey, lateral
nTPM: 680.4
2140 Male, age 76, both hemispheres 688.0
2272 Male, age 74, both hemispheres 682.5
2053 Male, age 18, unknown 670.7
Pretectal area
nTPM: 696.7
1817 Female, age 42, unknown 724.7
1815 Male, age 53, unknown 710.7
2007 Male, age 72, unknown 709.6
1816 Male, age 51, unknown 705.6
2667 Female, age 75, unknown 704.1
1944 Female, age 72, unknown 702.2
2273 Male, age 74, both hemispheres 695.5
2316 Male, age 76, right hemisphere 692.5
2224 Female, age 72, unknown 680.9
2825 Male, age 18, unknown 675.3
2407 Male, age 75, both hemispheres 662.3
Red nucleus
nTPM: 725.3
2503 Female, age 72, unknown 751.3
2227 Male, age 72, unknown 741.9
1821 Female, age 72, unknown 739.9
1865 Male, age 51, unknown 731.8
2769 Male, age 72, unknown 731.4
1904 Male, age 53, unknown 728.3
1954 Female, age 42, unknown 727.2
2785 Male, age 18, unknown 726.6
2588 Male, age 74, left hemisphere 721.3
2823 Male, age 76, right hemisphere 719.0
2725 Female, age 75, unknown 718.9
2584 Male, age 75, left hemisphere 666.3
Substantia nigra
nTPM: 714.1
1916 Female, age 42, unknown 774.4
1851 Male, age 51, unknown 738.5
2699 Male, age 18, unknown 728.1
1889 Female, age 72, unknown 718.4
2665 Male, age 74, both hemispheres 703.3
1941 Male, age 53, unknown 701.8
2583 Male, age 75, right hemisphere 701.3
2241 Male, age 72, unknown 695.3
2590 Female, age 75, unknown 694.9
2409 Female, age 72, unknown 685.4
Superior colliculus
nTPM: 697.3
2087 Female, age 72, unknown 716.5
1995 Male, age 72, unknown 713.3
1913 Female, age 42, unknown 712.1
2668 Female, age 75, unknown 706.2
2587 Male, age 74, left hemisphere 702.8
1796 Male, age 53, unknown 698.1
2261 Male, age 18, unknown 693.2
1839 Male, age 51, unknown 680.0
1895 Male, age 76, right hemisphere 678.7
2664 Male, age 75, both hemispheres 671.9
Ventral tegmental area
nTPM: 709.1
1915 Female, age 42, unknown 734.9
2410 Female, age 72, unknown 730.9
2218 Male, age 76, both hemispheres 705.6
2223 Female, age 72, unknown 702.6
1942 Male, age 51, unknown 691.1
2021 Male, age 53, unknown 689.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 758.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 758.6
Samples: 139

Max nTPM: 1969.7
Min nTPM: 219.9
Std nTPM: 233.7
Median nTPM: 728.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1969.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1372.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1361.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1356.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1345.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1242.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1196.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1184.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1156.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1137.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1134.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.2
FF:10158-103A5 76 years, female 239.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 367.2
Pig sample Sample description nTPM
Midbrain
nTPM: 316.5
Samples: 4

Max nTPM: 490.2
Min nTPM: 204.4
Sample A Female 490.2
Sample B Female 293.4
Sample C Male 277.9
Sample D Male 204.4
Periaqueductal gray
nTPM: 238.9
Samples: 3

Max nTPM: 255.4
Min nTPM: 218.8
Sample B Female 242.6
Sample C Male 255.4
Sample D Male 218.8
Substantia nigra
nTPM: 315.4
Samples: 4

Max nTPM: 410.2
Min nTPM: 256.3
Sample A Female 410.2
Sample B Female 319.1
Sample C Male 256.3
Sample D Male 276.0
Superior colliculi
nTPM: 367.2
Samples: 4

Max nTPM: 501.7
Min nTPM: 252.9
Sample A Female 403.2
Sample B Female 501.7
Sample C Male 310.9
Sample D Male 252.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.5
Samples: 4

Max nTPM: 149.7
Min nTPM: 118.4
Sample A Male 149.7
Sample B Male 118.5
Sample C Female 118.4
Sample D Female 135.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69873558 Antisense, RP_050512_01_E06, Mouse strain C57BL/6J (56 days, male) 0.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.