MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:40.7 nTPM
FANTOM5:108.8 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:60.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
2666 Male, age 74, left hemisphere 42.2
2586 Male, age 75, left hemisphere 41.6
1870 Female, age 42, unknown 41.4
1827 Male, age 72, unknown 40.4
2411 Female, age 72, unknown 40.3
1833 Male, age 53, unknown 39.7
1830 Male, age 51, unknown 38.4
2019 Male, age 18, unknown 37.7
2219 Male, age 76, both hemispheres 37.0
2828 Female, age 72, unknown 35.9
Dorsal raphe nucleus
nTPM: 37.3
2750 Male, age 76, both hemispheres 38.9
2047 Male, age 72, unknown 37.4
2298 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 37.0
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 39.9
2097 Female, age 72, unknown 41.2
1890 Male, age 53, unknown 40.4
1848 Female, age 42, unknown 39.8
2849 Male, age 72, unknown 38.4
Median raphe nucleus
nTPM: 39.9
2220 Male, age 76, midline 39.9
Pedunculopontine tegmental nucleus
nTPM: 37.1
1921 Female, age 85, both hemispheres 40.2
2334 Male, age 80, both hemispheres 38.7
2338 Male, age 61, both hemispheres 32.3
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 41.2
1947 Male, age 18, unknown 38.8
1795 Male, age 51, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 38.4
1840 Male, age 53, unknown 39.3
1831 Male, age 72, unknown 38.7
2464 Female, age 72, unknown 37.8
2850 Male, age 76, both hemispheres 37.8
Periaquaductal grey, lateral
nTPM: 35.7
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 35.9
2272 Male, age 74, both hemispheres 33.0
Pretectal area
nTPM: 39.9
1816 Male, age 51, unknown 45.6
1944 Female, age 72, unknown 45.5
2007 Male, age 72, unknown 43.9
1817 Female, age 42, unknown 42.0
1815 Male, age 53, unknown 41.4
2825 Male, age 18, unknown 39.5
2407 Male, age 75, both hemispheres 37.9
2224 Female, age 72, unknown 37.6
2316 Male, age 76, right hemisphere 35.9
2667 Female, age 75, unknown 35.8
2273 Male, age 74, both hemispheres 34.1
Red nucleus
nTPM: 39.8
2588 Male, age 74, left hemisphere 41.9
2725 Female, age 75, unknown 41.8
1821 Female, age 72, unknown 41.5
2503 Female, age 72, unknown 41.3
2584 Male, age 75, left hemisphere 40.8
1904 Male, age 53, unknown 40.3
2785 Male, age 18, unknown 40.0
1954 Female, age 42, unknown 39.2
1865 Male, age 51, unknown 39.0
2227 Male, age 72, unknown 38.6
2769 Male, age 72, unknown 36.8
2823 Male, age 76, right hemisphere 36.7
Substantia nigra
nTPM: 40.0
1889 Female, age 72, unknown 42.7
2583 Male, age 75, right hemisphere 42.3
2241 Male, age 72, unknown 41.4
2409 Female, age 72, unknown 40.9
1941 Male, age 53, unknown 40.3
1851 Male, age 51, unknown 39.5
2665 Male, age 74, both hemispheres 39.0
1916 Female, age 42, unknown 38.4
2590 Female, age 75, unknown 37.9
2699 Male, age 18, unknown 37.3
Superior colliculus
nTPM: 40.3
2668 Female, age 75, unknown 42.8
2261 Male, age 18, unknown 42.3
2087 Female, age 72, unknown 40.6
2587 Male, age 74, left hemisphere 40.4
2664 Male, age 75, both hemispheres 40.2
1913 Female, age 42, unknown 39.7
1839 Male, age 51, unknown 39.6
1995 Male, age 72, unknown 39.4
1895 Male, age 76, right hemisphere 39.3
1796 Male, age 53, unknown 38.8
Ventral tegmental area
nTPM: 38.6
2410 Female, age 72, unknown 40.8
2223 Female, age 72, unknown 39.8
1915 Female, age 42, unknown 38.7
2218 Male, age 76, both hemispheres 38.5
1942 Male, age 51, unknown 37.8
2021 Male, age 53, unknown 36.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 139

Max nTPM: 68.9
Min nTPM: 26.7
Std nTPM: 6.9
Median nTPM: 39.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 68.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 57.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 56.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 56.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 55.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 54.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 54.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 54.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 53.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.8
FF:10158-103A5 76 years, female 108.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.2
Pig sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 41.3
Min nTPM: 30.4
Sample A Female 30.4
Sample B Female 39.0
Sample C Male 38.0
Sample D Male 41.3
Periaqueductal gray
nTPM: 34.2
Samples: 3

Max nTPM: 35.8
Min nTPM: 33.2
Sample B Female 35.8
Sample C Male 33.2
Sample D Male 33.7
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 41.8
Min nTPM: 30.9
Sample A Female 37.5
Sample B Female 30.9
Sample C Male 41.8
Sample D Male 33.6
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 36.7
Min nTPM: 23.1
Sample A Female 32.1
Sample B Female 23.1
Sample C Male 36.7
Sample D Male 35.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 61.8
Min nTPM: 58.8
Sample A Male 58.8
Sample B Male 61.7
Sample C Female 61.5
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
545119 Antisense, RP_040825_02_F02, Mouse strain C57BL/6J (56 days, male) 3.3
70794001 Antisense, RP_050712_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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