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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
HIPPOCAMPUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:64.5 nTPM
GTEx:74.4 nTPM
FANTOM5:139.5 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 64.5
Sample id Sample description nTPM
Hippocampus
nTPM: 64.5
1911 Female, age 85, right hemisphere 75.0
2529 Female, age 94, left hemisphere 74.5
2621 Female, age 67, right hemisphere 61.6
1898 Male, age 80, left hemisphere 59.9
1855 Male, age 76, left hemisphere 59.4
2148 Female, age 91, left hemisphere 56.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 74.4
Samples: 197

Max nTPM: 300.0
Min nTPM: 12.2
Std nTPM: 50.1
Median nTPM: 58.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 300.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 261.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 246.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 229.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 215.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 204.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 198.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 197.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 186.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 186.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 171.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 169.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 168.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 157.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 150.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 147.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 146.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 142.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 141.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 139.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 139.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 138.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 134.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 131.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 131.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 131.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 126.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 125.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 124.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 121.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 119.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 118.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 117.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 113.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 113.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 113.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 112.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 110.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 109.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 104.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 103.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 101.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 101.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 99.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 98.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 95.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 94.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 93.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 91.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 91.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 90.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 90.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 89.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 88.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 87.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 86.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 86.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 86.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 86.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 86.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 84.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 84.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 84.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 84.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 84.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 82.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 82.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 81.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 80.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 79.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 79.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 78.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 77.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 76.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 76.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 75.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 75.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 73.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 73.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 72.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 72.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 72.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 71.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 71.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 71.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 70.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 69.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 69.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 68.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 68.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 67.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 65.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 62.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 61.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 61.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 61.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 60.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 59.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 58.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 58.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 58.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 57.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 57.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 56.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 56.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 53.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 53.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 53.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 53.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 53.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 52.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 52.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 52.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 52.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 52.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 52.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 52.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 51.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 51.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 51.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 50.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 50.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 49.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 48.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 47.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 47.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 47.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 46.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 46.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 45.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 45.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 44.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 44.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 43.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 43.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 43.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 42.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 42.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 41.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 41.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 41.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 41.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 41.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 40.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 40.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 40.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 40.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 39.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 39.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 39.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 38.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 37.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 37.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 37.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 37.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 36.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 36.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 35.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 34.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 34.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 34.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 33.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 33.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 32.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 31.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 31.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 30.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 30.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 29.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 29.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 29.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 28.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 28.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 28.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 27.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 27.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 27.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 26.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 25.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 25.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 24.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 23.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 23.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 22.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 21.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 21.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 19.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 19.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 18.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 17.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 17.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 16.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 15.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 15.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 12.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 12.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 139.5
FF:10153-102I9 76 years, female 165.0
FF:10169-103B7 60 years, female 114.0

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