We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SOD1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SOD1
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:653.1 nTPM
HPA:653.1 nTPM
FANTOM5:1302.3 Scaled Tags Per Million
Pig:113.7 nTPM
Allen mouse:4.6 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 653.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 558.0
2188 Female, age 91, both hemispheres 586.4
2301 Female, age 85, both hemispheres 553.5
2090 Male, age 80, both hemispheres 550.3
1984 Male, age 76, both hemispheres 541.7
Dorsal cochlear nucleus
nTPM: 557.7
2187 Female, age 91, both hemispheres 582.3
2802 Male, age 74, right hemisphere 558.3
2370 Male, age 61, both hemispheres 554.3
2058 Male, age 76, both hemispheres 552.1
2378 Male, age 80, both hemispheres 541.3
Dorsal tegmental nucleus
nTPM: 577.1
2083 Male, age 80, both hemispheres 598.4
2326 Male, age 74, both hemispheres 572.3
2358 Male, age 61, both hemispheres 570.5
1936 Male, age 76, left hemisphere 567.3
Dorsolateral tegmental area
nTPM: 576.3
2751 Female, age 85, both hemispheres 593.5
2654 Male, age 80, both hemispheres 590.6
2360 Male, age 74, both hemispheres 575.3
2141 Male, age 76, both hemispheres 569.4
2337 Male, age 61, both hemispheres 552.6
Kolliker-Fuse nucleus
nTPM: 598.0
2163 Male, age 80, both hemispheres 626.6
2315 Male, age 76, right hemisphere 585.4
2793 Female, age 91, left hemisphere 581.9
Lateral lemniscal nuclei
nTPM: 585.1
2169 Male, age 76, both hemispheres 633.3
2746 Female, age 85, left hemisphere 595.1
2036 Male, age 80, both hemispheres 582.5
2453 Male, age 74, right hemisphere 565.9
2320 Female, age 91, left hemisphere 548.7
Lateral parabrachial nucleus
nTPM: 582.5
2139 Female, age 85, right hemisphere 620.4
2013 Male, age 80, both hemispheres 579.7
2792 Male, age 76, both hemispheres 570.5
2790 Male, age 61, both hemispheres 559.6
Lateral vestibular nucleus
nTPM: 587.8
2184 Male, age 76, both hemispheres 614.0
2311 Male, age 80, both hemispheres 561.6
Locus coeruleus
nTPM: 653.1
2014 Male, age 55, unknown 702.7
2123 Female, age 91, both hemispheres 684.3
2788 Male, age 74, unknown 683.4
2720 Male, age 74, both hemispheres 657.2
1980 Male, age 76, both hemispheres 626.5
2317 Female, age 72, unknown 619.7
2162 Male, age 80, both hemispheres 597.8
Medial olivary nucleus
nTPM: 573.6
1943 Male, age 61, both hemispheres 594.2
2138 Female, age 91, both hemispheres 576.2
2851 Male, age 80, both hemispheres 562.2
1962 Male, age 76, both hemispheres 561.9
Medial parabrachial nucleus
nTPM: 578.7
2854 Male, age 80, both hemispheres 606.6
2170 Female, age 91, both hemispheres 602.1
2786 Male, age 76, both hemispheres 567.7
2156 Male, age 61, both hemispheres 558.6
2463 Female, age 85, right hemisphere 558.5
Medial periolivary nuclei
nTPM: 599.6
2171 Female, age 85, both hemispheres 653.0
2063 Male, age 76, both hemispheres 633.3
2791 Male, age 74, right hemisphere 608.0
2081 Male, age 80, both hemispheres 556.9
2458 Female, age 91, both hemispheres 546.9
Motor facial nucleus
nTPM: 591.8
2062 Male, age 76, both hemispheres 636.2
2365 Male, age 74, right hemisphere 610.0
2697 Female, age 85, both hemispheres 604.0
2126 Male, age 61, both hemispheres 575.1
2327 Male, age 80, both hemispheres 569.5
2795 Female, age 91, both hemispheres 556.2
Motor trigeminal nucleus
nTPM: 568.8
2079 Male, age 80, both hemispheres 601.3
2309 Male, age 76, both hemispheres 575.7
2560 Male, age 74, both hemispheres 565.0
2335 Male, age 61, both hemispheres 554.9
2321 Female, age 91, both hemispheres 547.4
Nuclei of the trapezoid body
nTPM: 609.1
1983 Male, age 76, both hemispheres 645.0
2159 Male, age 61, both hemispheres 638.3
2735 Female, age 85, both hemispheres 630.5
2166 Male, age 80, both hemispheres 580.2
2368 Female, age 91, both hemispheres 551.5
Paramedian reticular nucleus
nTPM: 619.4
2050 Female, age 85, both hemispheres 671.9
2057 Male, age 80, both hemispheres 613.8
2052 Male, age 76, both hemispheres 602.8
2313 Male, age 61, both hemispheres 589.1
Pontine nuclei
nTPM: 626.0
2727 Male, age 61, right hemisphere 686.6
1863 Male, age 55, unknown 674.6
2787 Female, age 85, both hemispheres 669.8
2109 Female, age 72, unknown 638.2
1968 Male, age 76, left hemisphere 611.8
2454 Male, age 74, left hemisphere 602.5
2319 Female, age 91, both hemispheres 568.3
2115 Male, age 80, left hemisphere 556.2
Pontine raphe nucleus
nTPM: 610.7
2122 Female, age 85, midline 629.2
2853 Male, age 76, midline 592.2
Posteroventral cochlear nucleus
nTPM: 573.7
2752 Female, age 85, both hemispheres 612.6
2070 Male, age 76, both hemispheres 572.9
2341 Male, age 80, both hemispheres 563.5
2135 Female, age 91, both hemispheres 560.0
2371 Male, age 61, both hemispheres 559.4
Principal sensory trigeminal nucleus
nTPM: 607.7
2158 Male, age 61, both hemispheres 647.3
2008 Male, age 80, left hemisphere 620.3
2324 Male, age 76, both hemispheres 593.3
2367 Female, age 91, left hemisphere 569.8
Reticular pontine nucleus, caudal
nTPM: 583.6
2092 Male, age 76, both hemispheres 617.5
2332 Male, age 80, right hemisphere 582.5
2457 Female, age 91, both hemispheres 572.6
2559 Male, age 74, both hemispheres 561.6
Reticular pontine nucleus, oral
nTPM: 599.7
2361 Male, age 74, both hemispheres 625.2
2012 Female, age 85, both hemispheres 622.7
1939 Male, age 80, both hemispheres 600.5
2167 Male, age 76, both hemispheres 582.9
2366 Female, age 91, both hemispheres 567.2
Reticulotegmental nucleus
nTPM: 575.5
2325 Male, age 76, both hemispheres 602.4
2322 Female, age 91, both hemispheres 578.9
2333 Male, age 80, both hemispheres 569.3
2452 Male, age 74, both hemispheres 551.4
Spinal trigeminal nucleus, oral
nTPM: 580.3
2164 Male, age 80, both hemispheres 598.4
2737 Female, age 85, both hemispheres 590.1
1978 Male, age 76, both hemispheres 552.4
Subcoeruleus area
nTPM: 579.3
1958 Male, age 80, both hemispheres 615.5
2323 Female, age 91, left hemisphere 588.0
2369 Female, age 85, left hemisphere 579.9
2089 Male, age 76, left hemisphere 567.4
2451 Male, age 74, both hemispheres 546.0
Superior olive
nTPM: 597.5
1875 Female, age 85, both hemispheres 644.8
2364 Male, age 74, right hemisphere 620.8
2020 Male, age 76, both hemispheres 595.9
2329 Male, age 80, right hemisphere 567.2
2561 Female, age 91, both hemispheres 558.6
Superior vestibular nucleus
nTPM: 597.9
2383 Male, age 74, both hemispheres 633.9
2015 Male, age 80, both hemispheres 592.9
2061 Male, age 76, both hemispheres 566.9
Ventral periolivary nuclei
nTPM: 603.1
2165 Male, age 80, both hemispheres 626.8
2130 Female, age 85, both hemispheres 626.5
2023 Male, age 76, both hemispheres 603.4
2794 Female, age 91, left hemisphere 555.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 580.0
2840 Female, age 85, both hemispheres 609.0
1959 Male, age 76, both hemispheres 590.1
2449 Male, age 74, both hemispheres 587.1
2359 Male, age 61, both hemispheres 583.1
2161 Male, age 80, both hemispheres 568.2
2456 Female, age 91, both hemispheres 542.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1302.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1302.3
FF:10182-103D2 60 years, female 1706.5
FF:10165-103B3 76 years, female 898.0
Pons
Scaled Tags Per Million: 600.6
FF:10033-101E6 18-54 years, mixed 600.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.7
Pig sample Sample description nTPM
Pons
nTPM: 113.8
Samples: 4

Max nTPM: 127.4
Min nTPM: 86.9
Sample A Female 116.1
Sample B Female 86.9
Sample C Male 124.6
Sample D Male 127.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 4.6
79587726 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 10.1
79749602 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 5.2
994 Antisense, RP_Baylor_103044, Mouse strain C57BL/6J (56 days, male) 3.7
993 Sense, RPS_Baylor_37046, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.