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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:588.1 nTPM
HPA:588.1 nTPM
GTEx:503.3 nTPM
FANTOM5:1041.9 Scaled Tags Per Million
Pig:111.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 588.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 575.4
1981 Female, age 72, midline 617.7
2048 Male, age 55, midline 574.7
2194 Female, age 79, both hemispheres 574.2
2816 Male, age 47, midline 564.4
2565 Male, age 75, midline 546.2
Cervical spinal cord, dorsal horn
nTPM: 588.1
2296 Male, age 66, both hemispheres 648.4
2173 Female, age 72, unknown 645.5
2069 Male, age 47, both hemispheres 576.7
1877 Male, age 55, unknown 555.6
2297 Male, age 75, both hemispheres 551.5
2721 Male, age 90, both hemispheres 550.9
Cervical spinal cord, ventral horn
nTPM: 571.3
2098 Female, age 72, unknown 616.5
2068 Male, age 55, unknown 580.8
2820 Female, age 79, both hemispheres 564.5
2480 Male, age 75, both hemispheres 563.6
2809 Male, age 90, both hemispheres 555.9
2295 Male, age 66, both hemispheres 546.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 503.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 503.3
Samples: 159

Max nTPM: 966.3
Min nTPM: 266.0
Std nTPM: 103.6
Median nTPM: 489.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 966.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 753.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 738.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 712.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 710.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 699.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 688.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 683.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 682.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 674.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 671.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 669.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 661.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 647.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 644.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 638.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 624.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 618.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 613.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 610.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 608.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 608.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 606.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 604.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 600.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 600.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 598.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 597.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 595.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 592.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 591.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 590.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 589.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 588.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 576.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 576.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 575.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 571.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 567.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 563.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 562.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 562.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 559.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 559.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 556.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 555.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 549.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 549.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 549.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 546.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 545.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 544.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 543.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 539.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 539.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 538.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 538.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 536.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 535.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 535.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 534.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 530.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 527.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 526.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 526.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 524.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 523.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 518.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 515.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 513.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 511.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 510.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 508.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 507.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 503.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 500.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 497.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 496.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 495.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 489.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 489.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 487.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 486.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 484.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 484.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 481.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 481.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 477.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 477.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 476.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 472.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 472.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 469.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 467.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 466.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 466.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 465.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 463.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 462.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 461.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 461.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 459.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 459.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 458.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 458.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 455.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 455.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 453.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 451.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 451.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 450.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 447.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 446.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 440.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 439.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 437.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 436.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 435.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 433.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 431.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 431.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 430.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 429.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 429.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 422.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 422.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 421.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 421.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 420.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 419.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 411.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 410.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 406.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 400.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 400.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 397.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 395.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 393.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 393.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 391.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 386.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 376.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 375.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 371.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 370.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 369.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 368.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 367.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 364.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 359.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 353.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 348.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 339.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 334.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 333.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 330.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 304.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 283.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 266.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1041.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1041.9
FF:10181-103D1 60 years, female 1604.0
FF:10159-103A6 76 years, female 479.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 91.4
Samples: 4

Max nTPM: 95.0
Min nTPM: 87.0
Sample A Female 95.0
Sample B Female 92.4
Sample C Male 87.0
Sample D Male 91.2
Ventral spinal cord
nTPM: 111.4
Samples: 4

Max nTPM: 125.0
Min nTPM: 97.7
Sample A Female 97.7
Sample B Female 125.0
Sample C Male 110.1
Sample D Male 112.8

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