MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:604.6 nTPM
HPA:604.6 nTPM
GTEx:631.0 nTPM
FANTOM5:713.1 Scaled Tags Per Million
Pig:95.2 nTPM
Mouse:522.1 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 604.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 555.6
2411 Female, age 72, unknown 582.1
1827 Male, age 72, unknown 575.8
1870 Female, age 42, unknown 562.5
2019 Male, age 18, unknown 562.1
2219 Male, age 76, both hemispheres 560.7
2828 Female, age 72, unknown 557.7
1833 Male, age 53, unknown 551.2
2666 Male, age 74, left hemisphere 548.0
1830 Male, age 51, unknown 545.7
2586 Male, age 75, left hemisphere 510.7
Dorsal raphe nucleus
nTPM: 586.9
2298 Female, age 72, unknown 614.5
2047 Male, age 72, unknown 597.2
2750 Male, age 76, both hemispheres 585.9
1828 Male, age 53, unknown 584.3
2016 Female, age 72, unknown 552.7
Inferior colliculus
nTPM: 548.2
2097 Female, age 72, unknown 559.6
1890 Male, age 53, unknown 547.1
1848 Female, age 42, unknown 545.9
2849 Male, age 72, unknown 540.4
Median raphe nucleus
nTPM: 604.6
2220 Male, age 76, midline 604.6
Pedunculopontine tegmental nucleus
nTPM: 590.6
2334 Male, age 80, both hemispheres 606.5
1921 Female, age 85, both hemispheres 585.7
2338 Male, age 61, both hemispheres 579.6
Periaquaductal grey, anterior
nTPM: 558.8
1947 Male, age 18, unknown 578.4
1795 Male, age 51, unknown 555.1
2502 Female, age 75, unknown 543.0
Periaquaductal grey, dorsal
nTPM: 547.6
2850 Male, age 76, both hemispheres 566.4
1840 Male, age 53, unknown 552.8
2464 Female, age 72, unknown 541.3
1831 Male, age 72, unknown 530.0
Periaquaductal grey, lateral
nTPM: 551.6
2272 Male, age 74, both hemispheres 559.0
2140 Male, age 76, both hemispheres 550.5
2053 Male, age 18, unknown 545.5
Pretectal area
nTPM: 569.7
1817 Female, age 42, unknown 588.9
1816 Male, age 51, unknown 585.9
1944 Female, age 72, unknown 583.0
2667 Female, age 75, unknown 583.0
2007 Male, age 72, unknown 579.0
2273 Male, age 74, both hemispheres 575.3
2224 Female, age 72, unknown 569.1
1815 Male, age 53, unknown 566.6
2825 Male, age 18, unknown 554.5
2407 Male, age 75, both hemispheres 546.6
2316 Male, age 76, right hemisphere 534.2
Red nucleus
nTPM: 560.1
1821 Female, age 72, unknown 608.6
2725 Female, age 75, unknown 592.7
1954 Female, age 42, unknown 573.5
2823 Male, age 76, right hemisphere 564.0
1865 Male, age 51, unknown 560.5
2503 Female, age 72, unknown 558.5
1904 Male, age 53, unknown 553.7
2769 Male, age 72, unknown 553.2
2785 Male, age 18, unknown 551.9
2227 Male, age 72, unknown 549.5
2588 Male, age 74, left hemisphere 529.2
2584 Male, age 75, left hemisphere 526.1
Substantia nigra
nTPM: 603.8
1916 Female, age 42, unknown 665.4
2241 Male, age 72, unknown 646.7
1941 Male, age 53, unknown 635.4
1851 Male, age 51, unknown 625.9
1889 Female, age 72, unknown 606.9
2409 Female, age 72, unknown 602.1
2699 Male, age 18, unknown 599.2
2665 Male, age 74, both hemispheres 562.9
2590 Female, age 75, unknown 557.3
2583 Male, age 75, right hemisphere 536.1
Superior colliculus
nTPM: 549.2
2587 Male, age 74, left hemisphere 574.8
1895 Male, age 76, right hemisphere 565.2
1796 Male, age 53, unknown 560.1
2087 Female, age 72, unknown 559.1
2668 Female, age 75, unknown 556.6
2261 Male, age 18, unknown 547.7
1839 Male, age 51, unknown 539.9
1913 Female, age 42, unknown 537.0
2664 Male, age 75, both hemispheres 526.7
1995 Male, age 72, unknown 524.9
Ventral tegmental area
nTPM: 589.3
2410 Female, age 72, unknown 617.9
1915 Female, age 42, unknown 616.7
2218 Male, age 76, both hemispheres 609.8
2223 Female, age 72, unknown 569.9
1942 Male, age 51, unknown 569.4
2021 Male, age 53, unknown 552.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 631.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 631.0
Samples: 139

Max nTPM: 1342.6
Min nTPM: 296.4
Std nTPM: 180.4
Median nTPM: 582.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1342.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1198.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1173.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1128.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1046.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1036.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 963.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 948.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 947.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 942.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 935.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 713.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 713.1
FF:10158-103A5 76 years, female 713.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.2
Pig sample Sample description nTPM
Midbrain
nTPM: 95.2
Samples: 4

Max nTPM: 109.7
Min nTPM: 83.1
Sample A Female 109.7
Sample B Female 90.3
Sample C Male 97.6
Sample D Male 83.1
Periaqueductal gray
nTPM: 74.9
Samples: 3

Max nTPM: 87.5
Min nTPM: 67.3
Sample B Female 70.0
Sample C Male 87.5
Sample D Male 67.3
Substantia nigra
nTPM: 93.8
Samples: 4

Max nTPM: 132.4
Min nTPM: 64.4
Sample A Female 132.4
Sample B Female 70.9
Sample C Male 107.6
Sample D Male 64.4
Superior colliculi
nTPM: 95.2
Samples: 4

Max nTPM: 111.7
Min nTPM: 69.9
Sample A Female 111.0
Sample B Female 69.9
Sample C Male 111.7
Sample D Male 88.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 522.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 522.1
Samples: 4

Max nTPM: 552.3
Min nTPM: 491.5
Sample A Male 552.3
Sample B Male 519.0
Sample C Female 491.5
Sample D Female 525.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
79587726 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 10.4
79749602 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 6.4
994 Antisense, RP_Baylor_103044, Mouse strain C57BL/6J (56 days, male) 1.6
993 Sense, RPS_Baylor_37046, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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