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RPL11
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:781.0 nTPM
HPA:781.0 nTPM
FANTOM5:70.7 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:662.0 nTPM
Allen mouse:13.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 781.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 739.6
2396 Male, age 61, right hemisphere 755.2
2497 Male, age 66, unknown 738.0
2032 Female, age 42, unknown 725.5
Centromedial thalamic nucleus
nTPM: 742.7
2279 Female, age 85, left hemisphere 761.7
2401 Male, age 76, right hemisphere 723.8
Habenula
nTPM: 720.1
1957 Male, age 80, both hemispheres 738.4
2203 Male, age 61, left hemisphere 726.9
2276 Male, age 66, unknown 712.6
2252 Male, age 62, unknown 702.7
Lateral geniculate body
nTPM: 746.6
2575 Female, age 94, right hemisphere 765.8
1953 Male, age 62, unknown 758.2
2857 Male, age 74, right hemisphere 757.5
2659 Male, age 66, unknown 752.0
2841 Male, age 80, both hemispheres 746.9
2035 Female, age 72, unknown 741.8
2399 Male, age 61, left hemisphere 737.6
2106 Female, age 67, right hemisphere 712.9
Lateral thalamic nuclei
nTPM: 753.0
2661 Female, age 72, unknown 768.0
2573 Female, age 94, left hemisphere 766.2
2577 Male, age 74, both hemispheres 757.3
2765 Female, age 67, both hemispheres 743.4
1903 Male, age 76, left hemisphere 730.2
Medial dorsal thalamic nucleus
nTPM: 738.7
2572 Female, age 94, right hemisphere 819.0
1930 Female, age 42, unknown 752.6
2660 Female, age 72, unknown 746.0
1810 Male, age 48, unknown 738.9
2576 Male, age 74, both hemispheres 735.4
1971 Male, age 61, right hemisphere 735.2
2492 Male, age 75, right hemisphere 733.0
2498 Male, age 66, unknown 732.1
2039 Female, age 72, unknown 732.0
2026 Male, age 62, unknown 729.0
1859 Male, age 76, both hemispheres 726.0
2283 Male, age 80, right hemisphere 713.2
2402 Female, age 67, both hemispheres 710.1
Medial geniculate body
nTPM: 750.9
2571 Male, age 75, right hemisphere 791.3
2049 Male, age 76, both hemispheres 765.4
2650 Female, age 94, left hemisphere 760.5
2207 Male, age 80, right hemisphere 738.8
2657 Male, age 74, right hemisphere 738.4
2217 Female, age 72, unknown 733.9
1811 Female, age 42, unknown 728.0
Nucleus reuniens
nTPM: 757.7
2210 Female, age 85, left hemisphere 771.1
2205 Male, age 80, left hemisphere 761.4
2212 Female, age 67, left hemisphere 740.7
Nucleus rhomboideus
nTPM: 747.6
2280 Female, age 85, left hemisphere 762.9
2213 Female, age 67, left hemisphere 752.9
2206 Male, age 80, both hemispheres 727.0
Posterior thalamic nucleus
nTPM: 781.0
2649 Female, age 94, both hemispheres 912.8
2655 Male, age 74, right hemisphere 759.3
2495 Female, age 67, right hemisphere 729.7
2266 Male, age 76, right hemisphere 722.3
Pulvinar
nTPM: 734.9
2724 Male, age 74, right hemisphere 752.9
2214 Male, age 76, right hemisphere 744.2
2398 Male, age 61, left hemisphere 737.7
1972 Male, age 62, unknown 737.1
1932 Male, age 80, right hemisphere 735.9
2496 Female, age 67, right hemisphere 734.9
2499 Male, age 66, unknown 734.1
2582 Female, age 72, unknown 732.5
1929 Male, age 48, unknown 728.6
1899 Female, age 42, unknown 711.0
Subthalamic nucleus
nTPM: 749.5
2124 Male, age 62, unknown 778.9
2658 Male, age 74, both hemispheres 773.6
2282 Male, age 61, both hemispheres 756.3
2216 Male, age 48, unknown 746.9
2275 Male, age 66, unknown 746.5
2779 Female, age 42, unknown 743.7
2056 Female, age 72, unknown 738.8
2406 Female, age 72, unknown 711.6
Ventral posterolateral thalamic nucleus
nTPM: 736.6
2578 Male, age 74, both hemispheres 756.9
2397 Male, age 61, right hemisphere 745.1
2570 Male, age 75, right hemisphere 740.6
2197 Male, age 80, both hemispheres 732.9
2740 Male, age 76, right hemisphere 725.6
2581 Female, age 72, unknown 718.2
Ventral posteromedial thalamic nucleus
nTPM: 730.9
2653 Male, age 74, both hemispheres 752.5
2127 Male, age 76, right hemisphere 738.3
2202 Male, age 61, left hemisphere 736.3
2281 Male, age 75, right hemisphere 721.9
2758 Male, age 80, both hemispheres 705.4
Ventral thalamic nuclei
nTPM: 748.5
2580 Male, age 66, unknown 763.6
2652 Male, age 74, left hemisphere 758.7
2291 Female, age 72, unknown 755.7
1845 Male, age 48, unknown 752.2
1860 Male, age 76, both hemispheres 746.1
1912 Female, age 42, unknown 746.0
2204 Male, age 80, both hemispheres 742.3
2285 Male, age 62, unknown 737.4
2858 Female, age 72, unknown 734.6
Ventromedial nucleus
nTPM: 727.0
1982 Female, age 72, unknown 738.9
1822 Female, age 42, unknown 715.1
Zona incerta
nTPM: 744.7
2822 Male, age 74, right hemisphere 759.3
2663 Female, age 72, unknown 745.8
2215 Male, age 66, unknown 745.1
2403 Male, age 62, unknown 742.1
2208 Male, age 80, right hemisphere 731.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 70.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 70.7
FF:10154-103A1 76 years, female 70.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.4
Pig sample Sample description nTPM
Thalamus
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 662.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 662.1
Samples: 4

Max nTPM: 733.4
Min nTPM: 610.4
Sample A Male 670.4
Sample B Male 634.0
Sample C Female 733.4
Sample D Female 610.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 13.7
276067 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 13.7
199144 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 13.3

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