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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:574.8 nTPM
GTEx:574.8 nTPM
FANTOM5:287.9 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:1098.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 574.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 574.8
Samples: 105

Max nTPM: 1101.3
Min nTPM: 327.4
Std nTPM: 137.7
Median nTPM:
413_1 59 years, female 1101.3
162_1 79 years, female 923.0
501_1 88 years, male 906.4
142_1 61 years, female 878.3
491_1 89 years, female 870.1
149_1 88 years, male 856.9
490_1 67 years, female 809.0
414_1 84 years, female 803.8
109_1 81 years, female 767.9
415_1 77 years, female 754.6
466_1 57 years, female 746.0
120_1 70 years, female 743.8
126_1 63 years, male 739.5
81_1 67 years, male 731.8
315_1 62 years, female 726.5
32_1 67 years, male 713.6
153_1 70 years, female 713.3
43_1 64 years, female 707.0
89_1 63 years, male 699.8
42_1 85 years, male 691.2
18_1 88 years, male 686.6
17_1 71 years, male 680.7
99_1 64 years, male 679.9
145_1 84 years, male 678.6
4_1 88 years, female 673.6
117_1 61 years, male 671.3
119_1 70 years, female 648.6
313_1 79 years, female 646.4
35_1 74 years, female 641.2
324_1 76 years, male 637.1
115_1 83 years, male 636.6
288_1 66 years, female 633.3
518_1 75 years, female 631.8
9_1 66 years, female 629.2
396_1 62 years, male 616.2
377_1 82 years, female 604.8
139_1 64 years, female 602.8
137_1 83 years, male 596.8
217_1 76 years, male 592.4
266_1 85 years, male 589.5
189_1 76 years, male 582.7
314_1 67 years, male 573.5
468_1 89 years, male 571.8
404_1 82 years, female 569.7
526_1 61 years, male 568.5
229_1 69 years, female 564.1
379_1 60 years, male 564.1
265_1 87 years, male 563.9
499_1 55 years, female 563.0
246_1 77 years, male 562.2
506_1 65 years, male 560.7
254_1 77 years, female 557.3
243_1 75 years, male 554.4
375_1 74 years, female 550.9
2_1 77 years, female 545.4
376_1 75 years, female 544.8
452_1 88 years, female 540.0
503_1 68 years, male 536.5
320_1 89 years, female 531.7
319_1 81 years, male 526.4
335_1 73 years, female 517.0
6_1 73 years, female 516.9
251_1 78 years, male 516.6
389_1 86 years, female 511.6
480_1 63 years, male 508.3
517_1 88 years, male 507.6
291_1 76 years, male 505.4
321_1 62 years, female 502.5
316_1 62 years, male 500.1
394_1 75 years, female 500.0
495_1 57 years, female 499.9
292_1 71 years, male 493.8
173_1 67 years, male 492.6
386_1 76 years, male 490.6
237_1 82 years, male 488.0
348_1 84 years, male 483.1
347_1 72 years, male 479.8
447_1 81 years, male 478.1
264_1 73 years, female 476.4
311_1 78 years, male 473.6
286_1 68 years, female 470.1
354_1 81 years, female 465.8
405_1 91 years, male 463.9
308_1 70 years, female 461.6
425_1 59 years, female 459.3
406_1 79 years, male 456.7
349_1 83 years, male 452.6
177_1 74 years, male 450.0
295_1 61 years, female 439.0
356_1 87 years, female 438.9
351_1 91 years, male 435.9
322_1 76 years, male 435.8
293_1 68 years, female 427.1
172_1 72 years, female 426.5
352_1 62 years, male 424.9
318_1 68 years, male 423.9
355_1 70 years, female 416.7
317_1 60 years, male 414.7
384_1 83 years, male 407.9
350_1 84 years, female 403.6
353_1 82 years, female 400.5
41_1 94 years, female 399.8
307_1 66 years, female 391.2
163_1 78 years, male 328.9
218_1 71 years, female 327.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 287.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 287.9
FF:10030-101E3 24-65 years, mixed 287.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.7
Pig sample Sample description nTPM
Retina
nTPM: 5.7
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 5.9
Sample C Male 5.5
Sample D Male 5.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1098.5
Mouse sample Sample description nTPM
Retina
nTPM: 1098.5
Samples: 4

Max nTPM: 1169.2
Min nTPM: 1068.9
Sample A Male 1169.2
Sample B Male 1086.8
Sample C Female 1069.2
Sample D Female 1068.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.