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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1209.4 nTPM
HPA:1209.4 nTPM
GTEx:1308.9 nTPM
FANTOM5:1106.8 Scaled Tags Per Million
Pig:1.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1209.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1145.4
1981 Female, age 72, midline 1211.6
2048 Male, age 55, midline 1169.8
2194 Female, age 79, both hemispheres 1145.5
2816 Male, age 47, midline 1127.3
2565 Male, age 75, midline 1072.7
Cervical spinal cord, dorsal horn
nTPM: 1209.4
2296 Male, age 66, both hemispheres 1313.3
2173 Female, age 72, unknown 1309.4
2069 Male, age 47, both hemispheres 1211.4
1877 Male, age 55, unknown 1193.9
2297 Male, age 75, both hemispheres 1163.8
2721 Male, age 90, both hemispheres 1064.6
Cervical spinal cord, ventral horn
nTPM: 1177.0
2098 Female, age 72, unknown 1213.0
2480 Male, age 75, both hemispheres 1208.3
2295 Male, age 66, both hemispheres 1188.9
2068 Male, age 55, unknown 1175.4
2809 Male, age 90, both hemispheres 1139.4
2820 Female, age 79, both hemispheres 1136.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1308.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1308.9
Samples: 159

Max nTPM: 2024.0
Min nTPM: 690.6
Std nTPM: 274.1
Median nTPM: 1271.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2024.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2019.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2001.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1936.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1876.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1861.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1850.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1831.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1821.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1799.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1797.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1779.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1729.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1702.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1700.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1695.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1693.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1677.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1651.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1648.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1640.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1629.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1623.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1621.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1618.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1618.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1610.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1601.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1599.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1590.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1561.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1560.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1533.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1523.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1516.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1513.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1499.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1497.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1489.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1488.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1475.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1456.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1453.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1450.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1449.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1444.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1413.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1413.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1408.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1398.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1392.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1388.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1385.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1381.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1375.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1372.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1371.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1370.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1368.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1367.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1365.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1365.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1361.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1348.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1344.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1341.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1340.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1332.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1317.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1312.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1305.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1293.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1290.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1288.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1283.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1283.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1281.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1274.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1272.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1271.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1264.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1254.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1248.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1248.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1238.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1238.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1237.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1237.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1233.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1233.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1230.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1226.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1226.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1219.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1219.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1215.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1212.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1211.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1206.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1203.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1197.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1194.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1193.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1192.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1182.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1180.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1177.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1173.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1162.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1162.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1161.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1155.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1147.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1147.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1146.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1138.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1137.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1127.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1126.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1125.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1124.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1123.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1109.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1103.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1097.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1092.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1088.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1077.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1071.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1070.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1066.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1065.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1063.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1059.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1058.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1051.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1030.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1029.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1027.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1020.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1014.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 997.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 996.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 978.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 967.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 954.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 941.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 929.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 919.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 918.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 916.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 906.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 897.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 875.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 808.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 783.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 771.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 741.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 690.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1106.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1106.8
FF:10181-103D1 60 years, female 1408.5
FF:10159-103A6 76 years, female 805.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.2
Sample A Female 2.0
Sample B Female 2.0
Sample C Male 1.2
Sample D Male 1.8
Ventral spinal cord
nTPM: 1.7
Samples: 4

Max nTPM: 2.7
Min nTPM: 0.9
Sample A Female 1.5
Sample B Female 1.7
Sample C Male 0.9
Sample D Male 2.7

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