MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1117.0 nTPM
HPA:1117.0 nTPM
GTEx:1139.3 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:844.7 nTPM
Allen mouse:24.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1117.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1105.7
2666 Male, age 74, left hemisphere 1133.4
2411 Female, age 72, unknown 1133.3
2586 Male, age 75, left hemisphere 1114.0
1870 Female, age 42, unknown 1111.2
2828 Female, age 72, unknown 1108.2
1827 Male, age 72, unknown 1103.8
2019 Male, age 18, unknown 1100.6
1830 Male, age 51, unknown 1091.1
1833 Male, age 53, unknown 1088.2
2219 Male, age 76, both hemispheres 1073.2
Dorsal raphe nucleus
nTPM: 1097.9
2016 Female, age 72, unknown 1112.3
2298 Female, age 72, unknown 1105.8
1828 Male, age 53, unknown 1095.2
2750 Male, age 76, both hemispheres 1088.7
2047 Male, age 72, unknown 1087.3
Inferior colliculus
nTPM: 1086.4
1890 Male, age 53, unknown 1101.5
2097 Female, age 72, unknown 1092.7
1848 Female, age 42, unknown 1077.5
2849 Male, age 72, unknown 1074.0
Median raphe nucleus
nTPM: 1070.0
2220 Male, age 76, midline 1070.0
Pedunculopontine tegmental nucleus
nTPM: 1092.5
2334 Male, age 80, both hemispheres 1102.1
2338 Male, age 61, both hemispheres 1095.9
1921 Female, age 85, both hemispheres 1079.7
Periaquaductal grey, anterior
nTPM: 1100.7
2502 Female, age 75, unknown 1118.3
1947 Male, age 18, unknown 1094.9
1795 Male, age 51, unknown 1088.8
Periaquaductal grey, dorsal
nTPM: 1088.8
1840 Male, age 53, unknown 1103.6
1831 Male, age 72, unknown 1088.2
2464 Female, age 72, unknown 1085.9
2850 Male, age 76, both hemispheres 1077.7
Periaquaductal grey, lateral
nTPM: 1082.8
2053 Male, age 18, unknown 1117.8
2140 Male, age 76, both hemispheres 1074.5
2272 Male, age 74, both hemispheres 1056.0
Pretectal area
nTPM: 1091.4
2316 Male, age 76, right hemisphere 1108.0
1815 Male, age 53, unknown 1104.6
1816 Male, age 51, unknown 1103.1
2007 Male, age 72, unknown 1097.8
2825 Male, age 18, unknown 1097.4
1817 Female, age 42, unknown 1093.8
2407 Male, age 75, both hemispheres 1090.1
2224 Female, age 72, unknown 1084.6
1944 Female, age 72, unknown 1078.2
2667 Female, age 75, unknown 1076.7
2273 Male, age 74, both hemispheres 1071.7
Red nucleus
nTPM: 1109.5
2503 Female, age 72, unknown 1147.8
1821 Female, age 72, unknown 1130.1
2588 Male, age 74, left hemisphere 1125.5
2584 Male, age 75, left hemisphere 1119.3
2725 Female, age 75, unknown 1112.9
1865 Male, age 51, unknown 1108.4
1904 Male, age 53, unknown 1103.6
2769 Male, age 72, unknown 1098.7
1954 Female, age 42, unknown 1095.4
2227 Male, age 72, unknown 1095.4
2785 Male, age 18, unknown 1091.3
2823 Male, age 76, right hemisphere 1085.4
Substantia nigra
nTPM: 1117.0
2241 Male, age 72, unknown 1144.2
2409 Female, age 72, unknown 1140.1
2665 Male, age 74, both hemispheres 1136.3
1851 Male, age 51, unknown 1134.1
2699 Male, age 18, unknown 1115.4
2590 Female, age 75, unknown 1109.1
1916 Female, age 42, unknown 1108.7
2583 Male, age 75, right hemisphere 1094.9
1889 Female, age 72, unknown 1093.5
1941 Male, age 53, unknown 1093.5
Superior colliculus
nTPM: 1101.0
2587 Male, age 74, left hemisphere 1141.5
1995 Male, age 72, unknown 1118.8
1913 Female, age 42, unknown 1107.5
2664 Male, age 75, both hemispheres 1103.1
2668 Female, age 75, unknown 1100.9
1796 Male, age 53, unknown 1098.0
1839 Male, age 51, unknown 1097.6
2261 Male, age 18, unknown 1082.4
2087 Female, age 72, unknown 1080.3
1895 Male, age 76, right hemisphere 1079.6
Ventral tegmental area
nTPM: 1106.1
2410 Female, age 72, unknown 1131.6
1915 Female, age 42, unknown 1125.5
2021 Male, age 53, unknown 1105.6
1942 Male, age 51, unknown 1104.3
2223 Female, age 72, unknown 1098.2
2218 Male, age 76, both hemispheres 1071.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1139.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1139.3
Samples: 139

Max nTPM: 4030.0
Min nTPM: 480.3
Std nTPM: 452.6
Median nTPM: 1033.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4030.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2686.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2454.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2293.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2233.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1924.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1829.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1806.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1779.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1749.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1731.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.9
Pig sample Sample description nTPM
Midbrain
nTPM: 48.3
Samples: 4

Max nTPM: 68.3
Min nTPM: 35.1
Sample A Female 68.3
Sample B Female 53.0
Sample C Male 36.9
Sample D Male 35.1
Periaqueductal gray
nTPM: 37.9
Samples: 3

Max nTPM: 40.1
Min nTPM: 36.0
Sample B Female 40.1
Sample C Male 37.5
Sample D Male 36.0
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 74.4
Min nTPM: 37.7
Sample A Female 74.4
Sample B Female 53.4
Sample C Male 38.1
Sample D Male 37.7
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 63.4
Min nTPM: 40.4
Sample A Female 63.4
Sample B Female 55.4
Sample C Male 44.2
Sample D Male 40.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 844.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 844.7
Samples: 4

Max nTPM: 894.6
Min nTPM: 779.0
Sample A Male 894.6
Sample B Male 831.4
Sample C Female 779.0
Sample D Female 873.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.0
100143502 Antisense, RP_110407_01_F02, Mouse strain C57BL/6J (56 days, male) 24.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.