BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.1 nTPM
HPA:53.1 nTPM
GTEx:31.8 nTPM
FANTOM5:22.1 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:14.0 nTPM
Allen mouse:16.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.1
2481 Female, age 94, left hemisphere 46.5
2289 Male, age 61, right hemisphere 42.9
2288 Male, age 75, left hemisphere 38.2
1781 Male, age 74, unknown 37.4
2290 Female, age 72, unknown 34.3
1857 Female, age 85, left hemisphere 34.2
1854 Male, age 80, left hemisphere 31.7
2846 Female, age 79, unknown 31.6
Claustrum
nTPM: 38.8
2491 Male, age 75, both hemispheres 44.3
1956 Male, age 74, unknown 40.2
2568 Male, age 61, both hemispheres 39.9
2645 Female, age 72, unknown 39.5
2196 Female, age 79, unknown 37.4
2292 Female, age 85, both hemispheres 37.4
2198 Male, age 80, both hemispheres 37.3
2284 Female, age 91, both hemispheres 36.8
2392 Female, age 94, both hemispheres 36.7
Globus pallidus, externus
nTPM: 53.1
2646 Male, age 61, right hemisphere 61.7
2567 Female, age 72, unknown 54.3
2772 Female, age 79, unknown 52.0
1996 Male, age 80, right hemisphere 51.5
2395 Male, age 75, both hemispheres 45.8
Globus pallidus, internus
nTPM: 47.0
2483 Female, age 94, right hemisphere 50.6
2778 Female, age 91, both hemispheres 50.4
2111 Female, age 85, right hemisphere 48.9
2287 Male, age 75, right hemisphere 48.9
1818 Male, age 74, unknown 45.6
2037 Male, age 80, right hemisphere 42.7
2566 Female, age 72, unknown 41.9
Nucleus accumbens
nTPM: 36.5
2732 Male, age 80, right hemisphere 42.0
2286 Male, age 75, left hemisphere 39.4
2391 Female, age 94, left hemisphere 38.0
2824 Male, age 61, right hemisphere 37.1
1806 Female, age 85, left hemisphere 35.5
1783 Male, age 74, unknown 34.9
2698 Female, age 72, unknown 33.2
1856 Female, age 91, right hemisphere 31.6
Nucleus basalis of Meynert
nTPM: 41.3
2569 Male, age 61, both hemispheres 63.9
2484 Female, age 94, left hemisphere 35.9
2821 Male, age 75, both hemispheres 33.4
2393 Male, age 80, right hemisphere 32.0
Nucleus of the diagonal band
nTPM: 37.7
1979 Male, age 74, unknown 41.5
2775 Male, age 80, right hemisphere 38.9
1812 Female, age 91, both hemispheres 36.9
2029 Male, age 61, right hemisphere 35.8
2195 Female, age 85, both hemispheres 35.6
Olfactory tubercle
nTPM: 36.1
2856 Male, age 75, right hemisphere 37.1
2487 Female, age 94, left hemisphere 36.4
1846 Male, age 80, right hemisphere 35.8
1998 Female, age 91, both hemispheres 35.1
Putamen
nTPM: 34.8
2647 Male, age 75, left hemisphere 43.5
1937 Female, age 91, right hemisphere 34.6
1829 Male, age 74, unknown 34.5
2482 Female, age 94, left hemisphere 34.0
2489 Female, age 72, unknown 34.0
2466 Female, age 79, unknown 32.4
1838 Male, age 80, right hemisphere 30.3
Septal nuclei
nTPM: 39.0
2199 Male, age 80, right hemisphere 43.7
2059 Female, age 85, both hemispheres 43.3
1960 Male, age 74, unknown 38.9
2031 Female, age 72, unknown 37.7
2009 Female, age 91, both hemispheres 37.5
2394 Male, age 61, left hemisphere 37.3
2629 Female, age 94, right hemisphere 34.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 95.4
Min nTPM: 4.2
Std nTPM: 16.0
Median nTPM: 25.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 95.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 89.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 88.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 83.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 81.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 79.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 71.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 70.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 68.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 66.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.4
Samples: 246

Max nTPM: 82.6
Min nTPM: 5.4
Std nTPM: 14.4
Median nTPM: 19.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 82.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 76.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 76.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 70.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 69.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 65.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 62.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 62.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 62.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 62.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 61.0
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Brain - Putamen (basal ganglia)
Average nTPM: 31.8
Samples: 205

Max nTPM: 110.0
Min nTPM: 6.4
Std nTPM: 16.7
Median nTPM: 29.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 110.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 100.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 80.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 74.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 73.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 70.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 69.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 67.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 64.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 63.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 60.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.6
FF:10164-103B2 76 years, female 11.6
Globus pallidus
Scaled Tags Per Million: 22.1
FF:10161-103A8 76 years, female 22.2
FF:10175-103C4 60 years, female 22.1
Nucleus accumbens
Scaled Tags Per Million: 13.9
FF:10037-101F1 23-56 years, mixed 13.9
Putamen
Scaled Tags Per Million: 8.0
FF:10176-103C5 60 years, female 8.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Caudate
nTPM: 11.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.1
Sample A Female 10.2
Sample B Female 13.6
Sample C Male 13.9
Sample D Male 9.1
Putamen
nTPM: 8.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 7.4
Sample C Male 11.6
Sample D Male 10.2
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.7
Sample A Female 12.7
Sample B Female 11.7
Sample C Male 11.3
Sample D Male 8.7
Ventral pallidum
nTPM: 10.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.9
Sample A Female 10.5
Sample B Female 11.1
Sample C Male 10.5
Sample D Male 8.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.4
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.6
Sample A Male 7.9
Sample B Male 5.6
Sample C Female 7.5
Sample D Female 8.5
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.1
Sample A Male 13.5
Sample B Male 16.3
Sample C Female 14.9
Sample D Female 11.1
Ventral forebrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.3
Sample A Male 10.7
Sample B Male 11.7
Sample C Female 10.3
Sample D Female 12.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.5
1505 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 16.5
1504 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 6.1
Pallidum
Expression energy: 15.9
1505 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 15.9
1504 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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