MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:33.9 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:9.5 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2586 Male, age 75, left hemisphere 49.6
2019 Male, age 18, unknown 44.7
2828 Female, age 72, unknown 44.2
1870 Female, age 42, unknown 40.5
2411 Female, age 72, unknown 40.1
1830 Male, age 51, unknown 39.4
1827 Male, age 72, unknown 37.8
1833 Male, age 53, unknown 37.1
2666 Male, age 74, left hemisphere 35.3
2219 Male, age 76, both hemispheres 33.1
Dorsal raphe nucleus
nTPM: 41.0
2016 Female, age 72, unknown 45.1
2298 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 40.6
2750 Male, age 76, both hemispheres 40.5
2047 Male, age 72, unknown 36.5
Inferior colliculus
nTPM: 37.2
1848 Female, age 42, unknown 39.4
1890 Male, age 53, unknown 37.3
2097 Female, age 72, unknown 36.9
2849 Male, age 72, unknown 35.4
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Pedunculopontine tegmental nucleus
nTPM: 34.5
1921 Female, age 85, both hemispheres 36.4
2334 Male, age 80, both hemispheres 36.4
2338 Male, age 61, both hemispheres 30.8
Periaquaductal grey, anterior
nTPM: 43.3
2502 Female, age 75, unknown 49.7
1795 Male, age 51, unknown 42.9
1947 Male, age 18, unknown 37.3
Periaquaductal grey, dorsal
nTPM: 37.4
2464 Female, age 72, unknown 38.6
1831 Male, age 72, unknown 37.7
1840 Male, age 53, unknown 37.3
2850 Male, age 76, both hemispheres 36.0
Periaquaductal grey, lateral
nTPM: 38.5
2140 Male, age 76, both hemispheres 39.3
2053 Male, age 18, unknown 38.9
2272 Male, age 74, both hemispheres 37.4
Pretectal area
nTPM: 40.3
2273 Male, age 74, both hemispheres 44.9
2407 Male, age 75, both hemispheres 43.5
1815 Male, age 53, unknown 42.5
2667 Female, age 75, unknown 42.0
2007 Male, age 72, unknown 41.5
1817 Female, age 42, unknown 40.2
2316 Male, age 76, right hemisphere 40.1
2825 Male, age 18, unknown 38.9
1816 Male, age 51, unknown 37.2
2224 Female, age 72, unknown 36.5
1944 Female, age 72, unknown 35.5
Red nucleus
nTPM: 42.7
2227 Male, age 72, unknown 48.4
2769 Male, age 72, unknown 48.3
2503 Female, age 72, unknown 48.1
2785 Male, age 18, unknown 46.1
1904 Male, age 53, unknown 42.9
1865 Male, age 51, unknown 42.2
1821 Female, age 72, unknown 41.9
1954 Female, age 42, unknown 40.9
2823 Male, age 76, right hemisphere 40.5
2588 Male, age 74, left hemisphere 40.2
2584 Male, age 75, left hemisphere 38.6
2725 Female, age 75, unknown 34.3
Substantia nigra
nTPM: 35.2
1889 Female, age 72, unknown 40.0
2583 Male, age 75, right hemisphere 39.8
1941 Male, age 53, unknown 35.7
2699 Male, age 18, unknown 35.7
1851 Male, age 51, unknown 35.4
1916 Female, age 42, unknown 34.0
2590 Female, age 75, unknown 33.3
2665 Male, age 74, both hemispheres 33.3
2409 Female, age 72, unknown 32.7
2241 Male, age 72, unknown 31.7
Superior colliculus
nTPM: 43.2
2664 Male, age 75, both hemispheres 54.2
2668 Female, age 75, unknown 48.9
1995 Male, age 72, unknown 47.2
1913 Female, age 42, unknown 45.9
1839 Male, age 51, unknown 42.6
1796 Male, age 53, unknown 40.9
1895 Male, age 76, right hemisphere 39.7
2261 Male, age 18, unknown 39.4
2587 Male, age 74, left hemisphere 37.6
2087 Female, age 72, unknown 35.9
Ventral tegmental area
nTPM: 37.0
2223 Female, age 72, unknown 39.7
1942 Male, age 51, unknown 38.3
2021 Male, age 53, unknown 36.8
2410 Female, age 72, unknown 36.7
1915 Female, age 42, unknown 36.3
2218 Male, age 76, both hemispheres 34.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 139

Max nTPM: 117.9
Min nTPM: 11.8
Std nTPM: 17.7
Median nTPM: 29.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 84.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 82.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 79.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 77.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 63.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 63.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 62.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 61.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.4
FF:10158-103A5 76 years, female 19.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 7.5
Sample C Male 10.0
Sample D Male 10.0
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 8.9
Min nTPM: 5.6
Sample B Female 6.6
Sample C Male 8.9
Sample D Male 5.6
Substantia nigra
nTPM: 6.1
Samples: 4

Max nTPM: 9.5
Min nTPM: 2.9
Sample A Female 9.5
Sample B Female 4.6
Sample C Male 7.5
Sample D Male 2.9
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.7
Sample A Female 10.6
Sample B Female 5.7
Sample C Male 9.0
Sample D Male 7.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.8
Sample A Male 10.4
Sample B Male 8.8
Sample C Female 8.8
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
1505 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 15.7
1504 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.