BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:109.0 nTPM
HPA:109.0 nTPM
GTEx:93.2 nTPM
FANTOM5:462.5 Scaled Tags Per Million
Pig:146.5 nTPM
Mouse:132.4 nTPM
Allen mouse:18.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008007Antibody HPA035970Antibody CAB015178
Glial cells LowLowLow
Neuronal cells LowLowLow






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 109.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.8
2481 Female, age 94, left hemisphere 74.1
1781 Male, age 74, unknown 54.7
1854 Male, age 80, left hemisphere 54.5
2288 Male, age 75, left hemisphere 52.1
1857 Female, age 85, left hemisphere 48.1
2289 Male, age 61, right hemisphere 38.2
2290 Female, age 72, unknown 33.1
2846 Female, age 79, unknown 27.9
Claustrum
nTPM: 85.6
2198 Male, age 80, both hemispheres 105.3
2392 Female, age 94, both hemispheres 103.9
2568 Male, age 61, both hemispheres 101.1
1956 Male, age 74, unknown 95.1
2491 Male, age 75, both hemispheres 88.6
2284 Female, age 91, both hemispheres 87.2
2196 Female, age 79, unknown 74.9
2645 Female, age 72, unknown 61.7
2292 Female, age 85, both hemispheres 52.7
Globus pallidus, externus
nTPM: 36.1
2772 Female, age 79, unknown 53.7
2395 Male, age 75, both hemispheres 50.2
2646 Male, age 61, right hemisphere 43.0
2567 Female, age 72, unknown 18.6
1996 Male, age 80, right hemisphere 14.8
Globus pallidus, internus
nTPM: 46.4
2483 Female, age 94, right hemisphere 68.9
2287 Male, age 75, right hemisphere 66.5
1818 Male, age 74, unknown 55.0
2778 Female, age 91, both hemispheres 45.4
2111 Female, age 85, right hemisphere 34.7
2037 Male, age 80, right hemisphere 27.7
2566 Female, age 72, unknown 26.3
Nucleus accumbens
nTPM: 62.6
1856 Female, age 91, right hemisphere 90.1
2824 Male, age 61, right hemisphere 80.1
2391 Female, age 94, left hemisphere 71.3
2286 Male, age 75, left hemisphere 66.6
2698 Female, age 72, unknown 57.1
1783 Male, age 74, unknown 56.1
1806 Female, age 85, left hemisphere 52.1
2732 Male, age 80, right hemisphere 27.6
Nucleus basalis of Meynert
nTPM: 34.8
2484 Female, age 94, left hemisphere 38.3
2393 Male, age 80, right hemisphere 38.0
2569 Male, age 61, both hemispheres 33.4
2821 Male, age 75, both hemispheres 29.4
Nucleus of the diagonal band
nTPM: 89.8
2029 Male, age 61, right hemisphere 112.4
2775 Male, age 80, right hemisphere 112.3
1812 Female, age 91, both hemispheres 103.9
2195 Female, age 85, both hemispheres 76.2
1979 Male, age 74, unknown 44.3
Olfactory tubercle
nTPM: 109.0
1846 Male, age 80, right hemisphere 114.8
1998 Female, age 91, both hemispheres 110.9
2487 Female, age 94, left hemisphere 109.7
2856 Male, age 75, right hemisphere 100.6
Putamen
nTPM: 42.9
1937 Female, age 91, right hemisphere 71.3
2482 Female, age 94, left hemisphere 63.5
1838 Male, age 80, right hemisphere 55.7
1829 Male, age 74, unknown 41.7
2647 Male, age 75, left hemisphere 36.7
2466 Female, age 79, unknown 17.8
2489 Female, age 72, unknown 13.4
Septal nuclei
nTPM: 69.7
2629 Female, age 94, right hemisphere 117.1
1960 Male, age 74, unknown 91.5
2031 Female, age 72, unknown 89.7
2009 Female, age 91, both hemispheres 80.9
2059 Female, age 85, both hemispheres 54.5
2199 Male, age 80, right hemisphere 30.6
2394 Male, age 61, left hemisphere 23.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 93.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 80.2
Samples: 246

Max nTPM: 159.2
Min nTPM: 44.9
Std nTPM: 17.5
Median nTPM: 78.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 159.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 148.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 127.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 126.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 126.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 125.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 119.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 118.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 117.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 113.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 112.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 93.2
Samples: 246

Max nTPM: 161.5
Min nTPM: 26.0
Std nTPM: 22.1
Median nTPM: 95.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 161.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 150.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 136.2
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 134.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 133.3
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 132.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 131.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 131.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 130.3
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 130.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 127.7
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Brain - Putamen (basal ganglia)
Average nTPM: 73.1
Samples: 205

Max nTPM: 121.3
Min nTPM: 37.1
Std nTPM: 13.8
Median nTPM: 72.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 121.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 112.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 110.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 108.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 105.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 102.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 100.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 100.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 100.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 98.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 97.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 462.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 370.7
FF:10164-103B2 76 years, female 370.7
Globus pallidus
Scaled Tags Per Million: 271.3
FF:10175-103C4 60 years, female 295.2
FF:10161-103A8 76 years, female 247.5
Nucleus accumbens
Scaled Tags Per Million: 462.5
FF:10037-101F1 23-56 years, mixed 462.5
Putamen
Scaled Tags Per Million: 428.9
FF:10176-103C5 60 years, female 428.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 146.5
Pig sample Sample description nTPM
Caudate
nTPM: 137.0
Samples: 4

Max nTPM: 148.6
Min nTPM: 123.6
Sample A Female 123.6
Sample B Female 135.5
Sample C Male 148.6
Sample D Male 140.2
Putamen
nTPM: 141.1
Samples: 4

Max nTPM: 173.1
Min nTPM: 118.7
Sample A Female 118.7
Sample B Female 123.5
Sample C Male 173.1
Sample D Male 149.0
Septum
nTPM: 135.4
Samples: 4

Max nTPM: 139.4
Min nTPM: 131.7
Sample A Female 131.7
Sample B Female 132.0
Sample C Male 138.6
Sample D Male 139.4
Ventral pallidum
nTPM: 146.5
Samples: 4

Max nTPM: 168.3
Min nTPM: 127.3
Sample A Female 140.8
Sample B Female 127.3
Sample C Male 168.3
Sample D Male 149.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 132.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 121.9
Samples: 4

Max nTPM: 133.5
Min nTPM: 116.7
Sample A Male 120.0
Sample B Male 116.7
Sample C Female 133.5
Sample D Female 117.5
Septum
nTPM: 109.4
Samples: 4

Max nTPM: 128.7
Min nTPM: 92.2
Sample A Male 120.3
Sample B Male 92.2
Sample C Female 96.5
Sample D Female 128.7
Ventral forebrain
nTPM: 132.4
Samples: 4

Max nTPM: 151.9
Min nTPM: 100.6
Sample A Male 135.0
Sample B Male 142.2
Sample C Female 100.6
Sample D Female 151.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 18.2
71924087 Antisense, RP_051017_02_H10, Mouse strain C57BL/6J (56 days, male) 18.9
68844707 Antisense, RP_050222_02_C04, Mouse strain C57BL/6J (56 days, male) 17.5
Pallidum
Expression energy: 18.2
71924087 Antisense, RP_051017_02_H10, Mouse strain C57BL/6J (56 days, male) 19.0
68844707 Antisense, RP_050222_02_C04, Mouse strain C57BL/6J (56 days, male) 17.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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