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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
107.726
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.8 nTPM
HPA:84.8 nTPM
FANTOM5:279.5 Scaled Tags Per Million
Pig:170.2 nTPM
Mouse:114.8 nTPM
Allen mouse:17.8 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB015178
Thalamus mean intensity 107.726
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 47.391
Parafascicular thalamic nucleus 18.452
Pregeniculate nucleus 38.239
Stria terminalis 102.424
Zona incerta 20.350
Anterodorsal thalamic nucleus -
Reticular thalamic nucleus 33.009
Vental anterior thalamic nucleus -
Medial habenular nucleus 107.726
Laterodorsal thalamic area 60.122
Paraventricular thalamic nucleus 84.831
Central medial thalamic area 32.181
Ventral lateral thalamic area -
Ventral medial thalamic area 17.843
Lateral habenulal nucleus 45.207
Ventral posterior thalamus 25.669
Anterior pretactal nucleus 25.278
Retromammillary nucleus -

THALAMUS - HPA Brain RNA-seq
Max nTPM 84.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 43.7
2032 Female, age 42, unknown 74.7
2497 Male, age 66, unknown 56.5
2396 Male, age 61, right hemisphere 0.0
Centromedial thalamic nucleus
nTPM: 56.8
2401 Male, age 76, right hemisphere 113.6
2279 Female, age 85, left hemisphere 0.0
Habenula
nTPM: 84.4
1957 Male, age 80, both hemispheres 142.8
2203 Male, age 61, left hemisphere 114.8
2252 Male, age 62, unknown 41.0
2276 Male, age 66, unknown 39.1
Lateral geniculate body
nTPM: 84.8
2106 Female, age 67, right hemisphere 134.0
2399 Male, age 61, left hemisphere 124.5
1953 Male, age 62, unknown 116.9
2035 Female, age 72, unknown 92.2
2857 Male, age 74, right hemisphere 63.2
2659 Male, age 66, unknown 56.4
2841 Male, age 80, both hemispheres 47.7
2575 Female, age 94, right hemisphere 43.8
Lateral thalamic nuclei
nTPM: 62.3
1903 Male, age 76, left hemisphere 90.8
2765 Female, age 67, both hemispheres 75.6
2577 Male, age 74, both hemispheres 58.9
2573 Female, age 94, left hemisphere 46.5
2661 Female, age 72, unknown 39.6
Medial dorsal thalamic nucleus
nTPM: 68.2
1859 Male, age 76, both hemispheres 114.4
2283 Male, age 80, right hemisphere 90.0
1971 Male, age 61, right hemisphere 85.7
2498 Male, age 66, unknown 80.7
2026 Male, age 62, unknown 77.8
2576 Male, age 74, both hemispheres 74.0
1810 Male, age 48, unknown 70.7
2492 Male, age 75, right hemisphere 58.1
1930 Female, age 42, unknown 55.5
2402 Female, age 67, both hemispheres 55.1
2039 Female, age 72, unknown 51.6
2660 Female, age 72, unknown 50.6
2572 Female, age 94, right hemisphere 22.0
Medial geniculate body
nTPM: 55.5
1811 Female, age 42, unknown 92.5
2650 Female, age 94, left hemisphere 72.9
2207 Male, age 80, right hemisphere 65.5
2657 Male, age 74, right hemisphere 44.4
2217 Female, age 72, unknown 43.2
2571 Male, age 75, right hemisphere 42.7
2049 Male, age 76, both hemispheres 27.4
Nucleus reuniens
nTPM: 37.0
2212 Female, age 67, left hemisphere 73.1
2205 Male, age 80, left hemisphere 37.9
2210 Female, age 85, left hemisphere 0.0
Nucleus rhomboideus
nTPM: 39.5
2206 Male, age 80, both hemispheres 110.7
2213 Female, age 67, left hemisphere 7.8
2280 Female, age 85, left hemisphere 0.0
Posterior thalamic nucleus
nTPM: 45.8
2266 Male, age 76, right hemisphere 65.7
2655 Male, age 74, right hemisphere 55.2
2495 Female, age 67, right hemisphere 47.4
2649 Female, age 94, both hemispheres 15.0
Pulvinar
nTPM: 82.0
2398 Male, age 61, left hemisphere 109.4
1972 Male, age 62, unknown 105.8
1932 Male, age 80, right hemisphere 102.7
2214 Male, age 76, right hemisphere 86.1
1899 Female, age 42, unknown 80.4
1929 Male, age 48, unknown 79.0
2724 Male, age 74, right hemisphere 78.8
2582 Female, age 72, unknown 67.1
2499 Male, age 66, unknown 56.1
2496 Female, age 67, right hemisphere 54.4
Subthalamic nucleus
nTPM: 37.5
2282 Male, age 61, both hemispheres 63.3
2406 Female, age 72, unknown 51.9
2124 Male, age 62, unknown 47.0
2275 Male, age 66, unknown 38.5
2658 Male, age 74, both hemispheres 35.0
2779 Female, age 42, unknown 34.7
2056 Female, age 72, unknown 17.3
2216 Male, age 48, unknown 12.3
Ventral posterolateral thalamic nucleus
nTPM: 67.2
2740 Male, age 76, right hemisphere 108.6
2197 Male, age 80, both hemispheres 93.4
2397 Male, age 61, right hemisphere 85.2
2578 Male, age 74, both hemispheres 44.4
2570 Male, age 75, right hemisphere 40.3
2581 Female, age 72, unknown 31.5
Ventral posteromedial thalamic nucleus
nTPM: 66.0
2202 Male, age 61, left hemisphere 90.6
2758 Male, age 80, both hemispheres 87.0
2127 Male, age 76, right hemisphere 58.8
2653 Male, age 74, both hemispheres 54.1
2281 Male, age 75, right hemisphere 39.6
Ventral thalamic nuclei
nTPM: 61.2
1845 Male, age 48, unknown 92.5
1860 Male, age 76, both hemispheres 90.1
2204 Male, age 80, both hemispheres 66.8
1912 Female, age 42, unknown 65.2
2580 Male, age 66, unknown 62.6
2285 Male, age 62, unknown 54.4
2652 Male, age 74, left hemisphere 46.7
2858 Female, age 72, unknown 42.4
2291 Female, age 72, unknown 29.7
Ventromedial nucleus
nTPM: 63.0
1982 Female, age 72, unknown 81.2
1822 Female, age 42, unknown 44.8
Zona incerta
nTPM: 44.8
2215 Male, age 66, unknown 79.7
2208 Male, age 80, right hemisphere 61.5
2663 Female, age 72, unknown 48.8
2403 Male, age 62, unknown 25.7
2822 Male, age 74, right hemisphere 8.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 279.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 279.5
FF:10154-103A1 76 years, female 279.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.2
Pig sample Sample description nTPM
Thalamus
nTPM: 170.2
Samples: 4

Max nTPM: 192.6
Min nTPM: 150.8
Sample A Female 192.6
Sample B Female 150.8
Sample C Male 175.6
Sample D Male 161.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 114.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 114.8
Samples: 4

Max nTPM: 133.2
Min nTPM: 96.8
Sample A Male 96.8
Sample B Male 133.2
Sample C Female 105.0
Sample D Female 124.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 17.8
68844707 Antisense, RP_050222_02_C04, Mouse strain C57BL/6J (56 days, male) 20.1
71924087 Antisense, RP_051017_02_H10, Mouse strain C57BL/6J (56 days, male) 15.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.