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NDUFS6
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  • NDUFS6
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:115.5 nTPM
HPA:115.5 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:195.3 nTPM
Allen mouse:0.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 115.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 109.3
2396 Male, age 61, right hemisphere 111.8
2497 Male, age 66, unknown 108.8
2032 Female, age 42, unknown 107.3
Centromedial thalamic nucleus
nTPM: 109.7
2401 Male, age 76, right hemisphere 114.4
2279 Female, age 85, left hemisphere 105.0
Habenula
nTPM: 109.7
2203 Male, age 61, left hemisphere 113.3
1957 Male, age 80, both hemispheres 113.1
2276 Male, age 66, unknown 107.7
2252 Male, age 62, unknown 104.8
Lateral geniculate body
nTPM: 115.3
1953 Male, age 62, unknown 121.9
2399 Male, age 61, left hemisphere 119.9
2575 Female, age 94, right hemisphere 118.1
2659 Male, age 66, unknown 115.5
2106 Female, age 67, right hemisphere 113.8
2857 Male, age 74, right hemisphere 113.4
2035 Female, age 72, unknown 113.1
2841 Male, age 80, both hemispheres 106.6
Lateral thalamic nuclei
nTPM: 111.6
2573 Female, age 94, left hemisphere 117.8
2765 Female, age 67, both hemispheres 114.7
1903 Male, age 76, left hemisphere 113.2
2661 Female, age 72, unknown 108.1
2577 Male, age 74, both hemispheres 104.0
Medial dorsal thalamic nucleus
nTPM: 111.6
2572 Female, age 94, right hemisphere 134.4
2498 Male, age 66, unknown 115.7
1859 Male, age 76, both hemispheres 113.5
1971 Male, age 61, right hemisphere 111.1
1930 Female, age 42, unknown 110.5
2026 Male, age 62, unknown 109.7
2660 Female, age 72, unknown 109.1
1810 Male, age 48, unknown 109.0
2492 Male, age 75, right hemisphere 108.6
2039 Female, age 72, unknown 108.5
2576 Male, age 74, both hemispheres 107.1
2283 Male, age 80, right hemisphere 106.6
2402 Female, age 67, both hemispheres 106.5
Medial geniculate body
nTPM: 110.6
2650 Female, age 94, left hemisphere 119.5
1811 Female, age 42, unknown 112.2
2049 Male, age 76, both hemispheres 111.1
2657 Male, age 74, right hemisphere 110.6
2207 Male, age 80, right hemisphere 108.2
2571 Male, age 75, right hemisphere 106.3
2217 Female, age 72, unknown 106.2
Nucleus reuniens
nTPM: 114.5
2212 Female, age 67, left hemisphere 118.8
2205 Male, age 80, left hemisphere 116.4
2210 Female, age 85, left hemisphere 108.2
Nucleus rhomboideus
nTPM: 109.1
2213 Female, age 67, left hemisphere 111.0
2206 Male, age 80, both hemispheres 110.9
2280 Female, age 85, left hemisphere 105.4
Posterior thalamic nucleus
nTPM: 115.5
2649 Female, age 94, both hemispheres 135.3
2495 Female, age 67, right hemisphere 110.5
2655 Male, age 74, right hemisphere 109.2
2266 Male, age 76, right hemisphere 107.0
Pulvinar
nTPM: 112.6
2398 Male, age 61, left hemisphere 120.2
1932 Male, age 80, right hemisphere 118.1
2724 Male, age 74, right hemisphere 116.8
2214 Male, age 76, right hemisphere 113.0
1972 Male, age 62, unknown 111.2
2582 Female, age 72, unknown 111.2
2499 Male, age 66, unknown 110.9
1929 Male, age 48, unknown 110.8
1899 Female, age 42, unknown 106.9
2496 Female, age 67, right hemisphere 106.5
Subthalamic nucleus
nTPM: 110.1
2124 Male, age 62, unknown 117.8
2282 Male, age 61, both hemispheres 112.6
2658 Male, age 74, both hemispheres 111.8
2406 Female, age 72, unknown 110.3
2216 Male, age 48, unknown 109.5
2779 Female, age 42, unknown 108.7
2056 Female, age 72, unknown 107.1
2275 Male, age 66, unknown 103.0
Ventral posterolateral thalamic nucleus
nTPM: 108.9
2397 Male, age 61, right hemisphere 114.1
2570 Male, age 75, right hemisphere 112.1
2740 Male, age 76, right hemisphere 111.9
2197 Male, age 80, both hemispheres 109.2
2578 Male, age 74, both hemispheres 104.4
2581 Female, age 72, unknown 101.9
Ventral posteromedial thalamic nucleus
nTPM: 108.7
2202 Male, age 61, left hemisphere 115.5
2127 Male, age 76, right hemisphere 107.4
2653 Male, age 74, both hemispheres 107.1
2281 Male, age 75, right hemisphere 106.9
2758 Male, age 80, both hemispheres 106.7
Ventral thalamic nuclei
nTPM: 111.7
2204 Male, age 80, both hemispheres 115.7
1845 Male, age 48, unknown 115.5
1860 Male, age 76, both hemispheres 115.0
1912 Female, age 42, unknown 113.6
2580 Male, age 66, unknown 112.2
2858 Female, age 72, unknown 109.2
2291 Female, age 72, unknown 108.2
2285 Male, age 62, unknown 107.9
2652 Male, age 74, left hemisphere 107.7
Ventromedial nucleus
nTPM: 106.3
1982 Female, age 72, unknown 110.0
1822 Female, age 42, unknown 102.5
Zona incerta
nTPM: 108.2
2215 Male, age 66, unknown 109.0
2403 Male, age 62, unknown 108.5
2822 Male, age 74, right hemisphere 108.3
2208 Male, age 80, right hemisphere 107.9
2663 Female, age 72, unknown 107.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 63.6
FF:10154-103A1 76 years, female 63.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.1
Pig sample Sample description nTPM
Thalamus
nTPM: 42.2
Samples: 4

Max nTPM: 57.6
Min nTPM: 27.2
Sample A Female 57.6
Sample B Female 30.7
Sample C Male 53.1
Sample D Male 27.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 195.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 195.3
Samples: 4

Max nTPM: 219.2
Min nTPM: 171.0
Sample A Male 219.2
Sample B Male 183.1
Sample C Female 207.7
Sample D Female 171.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.4
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.4

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